BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0103.p
         (139 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312695|ref|YP_003776787.1| AraC family transcription regul...   229   7e-62
gi|300310394|ref|YP_003774486.1| AraC family transcription regul...   135   9e-34

>gi|300312695|ref|YP_003776787.1| AraC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 293

 Score =  229 bits (584), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 113/138 (81%), Positives = 121/138 (87%), Gaps = 4/138 (2%)

Query: 2   VAKWHFHPEYEVHVITASSGKFFVGDFIGDFGPGNLVLTGPNLPHNWVSNLGAGEHVGAR 61
           VAKWHFHPEYEVHVITASSGKFFVGDFIGDFGPGNLVLTGPNLPHNWVSNLGA + V AR
Sbjct: 27  VAKWHFHPEYEVHVITASSGKFFVGDFIGDFGPGNLVLTGPNLPHNWVSNLGAHQQVPAR 86

Query: 62  DLVLQFSRPFADRMLGAIPELSPLQDLLEGAARGLQFPDALGRSIVPLMQDLAQASGARR 121
           DLVLQFSRPFA+R++GAIPELSPLQ++L+GAARGLQFPDALG SI PLMQ+LAQASGARR
Sbjct: 87  DLVLQFSRPFAERVVGAIPELSPLQEMLDGAARGLQFPDALGASITPLMQELAQASGARR 146

Query: 122 VFFFFXYHMSARARAAWC 139
           V       MS   R A C
Sbjct: 147 VVLM----MSVLERLASC 160


>gi|300310394|ref|YP_003774486.1| AraC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score =  135 bits (341), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 59/125 (47%), Positives = 82/125 (65%)

Query: 2   VAKWHFHPEYEVHVITASSGKFFVGDFIGDFGPGNLVLTGPNLPHNWVSNLGAGEHVGAR 61
             +WH+HPEYE+H++ A+SG+F+VGD IGDF PG LV+TGPNLP NW+S++ A E V  R
Sbjct: 27  TVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPGQLVMTGPNLPQNWISDIAADEMVPVR 86

Query: 62  DLVLQFSRPFADRMLGAIPELSPLQDLLEGAARGLQFPDALGRSIVPLMQDLAQASGARR 121
            LV+QF     D+   +I E+  +  LLE + RGL F  A   ++ PLMQ L    G +R
Sbjct: 87  SLVIQFPEQLVDQCAASIAEMEAIMPLLERSHRGLLFDAATSETVRPLMQRLIDQRGLKR 146

Query: 122 VFFFF 126
           +  F+
Sbjct: 147 LALFW 151


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.142    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 487,776
Number of extensions: 21579
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 139
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 63
Effective length of database: 1,260,010
Effective search space: 79380630
Effective search space used: 79380630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)