BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0102.p (144 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312695|ref|YP_003776787.1| AraC family transcription regul... 285 9e-79 gi|300310394|ref|YP_003774486.1| AraC family transcription regul... 114 3e-27 gi|300309661|ref|YP_003773753.1| AraC family transcription regul... 67 7e-13 gi|300311760|ref|YP_003775852.1| transcription regulator protein... 58 3e-10 gi|300311694|ref|YP_003775786.1| AraC family transcription regul... 57 6e-10 >gi|300312695|ref|YP_003776787.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 285 bits (729), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 135/144 (93%), Positives = 142/144 (98%) Query: 1 MMSVLEQLASCRERKPLAGPGYDLDAQRHMSSTINQVLSCIRQNLGGNLRESDVAELAGM 60 MMSVLE+LASC ERKPLAGPGYDL+AQRHMSST+NQVLSCIRQNLGGNLRE+D+AELAGM Sbjct: 150 MMSVLERLASCPERKPLAGPGYDLNAQRHMSSTLNQVLSCIRQNLGGNLRETDLAELAGM 209 Query: 61 SVSSFTRFFKRHTGCTFIQYQNGLRLNEACELLMCTELSVTEVCYRVGFNNLSNFNRQFL 120 SVSSFTRFFKRHTGCTFIQYQNGLRLNEACELLMCTELSVTEVCYRVGFNNLSNFNRQFL Sbjct: 210 SVSSFTRFFKRHTGCTFIQYQNGLRLNEACELLMCTELSVTEVCYRVGFNNLSNFNRQFL 269 Query: 121 AHKGMPPSRFRALHRLNDEVRAVA 144 A KGMPPSRFR+LHRLND+VRAVA Sbjct: 270 ASKGMPPSRFRSLHRLNDDVRAVA 293 >gi|300310394|ref|YP_003774486.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 114 bits (285), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 57/129 (44%), Positives = 86/129 (66%), Gaps = 1/129 (0%) Query: 4 VLEQLASCRERKPLAGPGYDLDAQRHMSSTINQVLSCIRQNLGGNLRESDVAELAGMSVS 63 +L+ LA+ E + LA Y LD SS +N+ ++ +R++L ++ E D+A++ G ++S Sbjct: 153 LLDVLANAPEPEVLASLSYKLDLSGVNSSGLNRAIAYLREHLTDDIGEQDLADMVGQNLS 212 Query: 64 SFTRFFKRHTGCTFIQYQNGLRLNEAC-ELLMCTELSVTEVCYRVGFNNLSNFNRQFLAH 122 SF+R FKRHTG T ++Y+N LR++ AC LL + +T++CY GF+NLSNFNR F Sbjct: 213 SFSRAFKRHTGTTLVRYKNQLRVDLACLALLTRPQARITDICYETGFSNLSNFNRHFHKI 272 Query: 123 KGMPPSRFR 131 KGM PS FR Sbjct: 273 KGMSPSEFR 281 >gi|300309661|ref|YP_003773753.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 338 Score = 66.6 bits (161), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 52/96 (54%) Query: 34 INQVLSCIRQNLGGNLRESDVAELAGMSVSSFTRFFKRHTGCTFIQYQNGLRLNEACELL 93 + + + I++ LR D+A MSVSS FK T + +QYQ LRL EA +L+ Sbjct: 230 VAKAIRLIKEGYDQALRIDDIARDVHMSVSSLHHHFKLVTAMSPLQYQKNLRLQEARKLI 289 Query: 94 MCTELSVTEVCYRVGFNNLSNFNRQFLAHKGMPPSR 129 + + SV +RVG+ + S F+R++ G PP R Sbjct: 290 LTADASVATAAHRVGYESSSQFSREYSRLFGAPPLR 325 >gi|300311760|ref|YP_003775852.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 58.2 bits (139), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 45/77 (58%) Query: 54 VAELAGMSVSSFTRFFKRHTGCTFIQYQNGLRLNEACELLMCTELSVTEVCYRVGFNNLS 113 +A +A +S SSF F+R G T + Y R+ A LL+ + S+ EV +VG+++ S Sbjct: 225 LARVAALSRSSFFERFRREVGLTPMDYLLAWRMALAKRLLLRADGSIAEVALQVGYSSAS 284 Query: 114 NFNRQFLAHKGMPPSRF 130 F+ F H G+PPS+F Sbjct: 285 TFSVAFSRHVGLPPSQF 301 >gi|300311694|ref|YP_003775786.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 375 Score = 57.0 bits (136), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 53/105 (50%) Query: 27 QRHMSSTINQVLSCIRQNLGGNLRESDVAELAGMSVSSFTRFFKRHTGCTFIQYQNGLRL 86 +RH S I + L + +++ ++ S+ A+ MS +F R FKR TG T + +R+ Sbjct: 248 KRHRSERIQKALIWLDEHMSSSINMSEAADHVSMSERNFQREFKRETGETPHCFLTKIRI 307 Query: 87 NEACELLMCTELSVTEVCYRVGFNNLSNFNRQFLAHKGMPPSRFR 131 AC L T+L + ++ R G + + R F H G+ P +R Sbjct: 308 EAACLYLKETDLPIEKIARRCGLVSGEHLARLFRKHHGVSPGEYR 352 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 395,587 Number of extensions: 12559 Number of successful extensions: 83 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 88 Number of HSP's successfully gapped: 5 Length of query: 144 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 67 Effective length of database: 1,255,275 Effective search space: 84103425 Effective search space used: 84103425 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)