BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0098.p (133 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspiri... 253 3e-69 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 80 6e-17 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 77 4e-16 >gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 824 Score = 253 bits (646), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 124/133 (93%), Positives = 131/133 (98%) Query: 1 VAAGKSFFASAAEKLSLLAYRLGAKLIAASGRVEIQAQNDGMEILAQKVVDIISTRDWIN 60 +AAGKSFFASAAEKLSLLAYRLGAKLIAASGRVEIQAQNDGME+LAQKVVDIISTRDWIN Sbjct: 692 LAAGKSFFASAAEKLSLLAYRLGAKLIAASGRVEIQAQNDGMELLAQKVVDIISTRDWIN 751 Query: 61 LKAKKGIRLNGGGSELVIAEGITGFTQGAHHVHASDHQTLGPQAKPAEFPGAQLCPSRAS 120 LKAKKGIRLNGGGSELVIAEGITGFTQGAHHVHA+DHQTLGPQ +PAEFPG++LCP+RAS Sbjct: 752 LKAKKGIRLNGGGSELVIAEGITGFTQGAHHVHAADHQTLGPQGRPAEFPGSRLCPARAS 811 Query: 121 GAAQSGSASVALS 133 GAAQSGSASV LS Sbjct: 812 GAAQSGSASVVLS 824 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 80.1 bits (196), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Query: 1 VAAGKSFFASAAEKLSLLAYRLGAKLIAASGRVEIQAQNDGMEILAQKVVDIISTRDWIN 60 +A GKS AS AEK+SL A++ G KL +A G+VE+QAQ+D +E++A+KV ++S + Sbjct: 705 IAVGKSLLASVAEKISLFAFKAGIKLFSAKGKVEVQAQSDDLELIAEKVARLLSASGRVE 764 Query: 61 LKAKKGIRLNGGGSELVI-AEGITGFTQGAHHVHASDHQTLGP 102 ++AK+ + + GGS + + A GIT T GA A H GP Sbjct: 765 IRAKEEVLITAGGSFIRLNASGITQGTSGAWEAKAGTHAMPGP 807 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 77.4 bits (189), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 4/121 (3%) Query: 1 VAAGKSFFASAAEKLSLLAYRLGAKLIAASGRVEIQAQNDGMEILAQKVVDIISTRDWIN 60 +A+GKS A+ EK+SL A G KL AA G+VEIQAQ+D ++++A+KV ++ST + Sbjct: 715 IASGKSLLATVKEKISLFAQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVE 774 Query: 61 LKAKKGIRLNGGGSELVI-AEGITGFTQGAHHVHASDHQTLGPQAKPAEFPGAQ---LCP 116 + AK + ++ GGS + I + GIT T G AS H GP ++ P Q L P Sbjct: 775 IHAKDEVMISAGGSFIQINSAGITQGTPGKWEAKASLHSMPGPASQNFVMPHVQKSELQP 834 Query: 117 S 117 S Sbjct: 835 S 835 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.129 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 368,904 Number of extensions: 13661 Number of successful extensions: 84 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 81 Number of HSP's successfully gapped: 4 Length of query: 133 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 58 Effective length of database: 1,264,745 Effective search space: 73355210 Effective search space used: 73355210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 125 (52.8 bits)