BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0094.p
         (321 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312709|ref|YP_003776801.1| hypothetical protein Hsero_3412...   633   0.0  

>gi|300312709|ref|YP_003776801.1| hypothetical protein Hsero_3412
           [Herbaspirillum seropedicae SmR1]
          Length = 469

 Score =  633 bits (1633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/321 (95%), Positives = 316/321 (98%)

Query: 1   MDSIALTQKLAVNEAVGAVEKQRDELKSKLMHAELEKQLAEKSLKDKYETQLKDREDMIE 60
           M+SIAL+QKLAVNEAVGAVEK+RDELKS LM +ELEKQLAE+SLKDKYETQLKDREDMIE
Sbjct: 149 MESIALSQKLAVNEAVGAVEKERDELKSSLMRSELEKQLAEQSLKDKYETQLKDREDMIE 208

Query: 61  RLRDMKARLSTKMVGETLEQHCETEFNRIRATAFPRAYFEKDNDARSGSKGDYIFRDTDE 120
           RLRDMKARLSTKMVGETLEQHCETEFNRIRATAFPRAYFEKDNDARSGSKGDYIFRDTDE
Sbjct: 209 RLRDMKARLSTKMVGETLEQHCETEFNRIRATAFPRAYFEKDNDARSGSKGDYIFRDTDE 268

Query: 121 GGTEIVSIMFEMKNESDRTATKNRNEDFLKELDKDRQEKGCEYAVLVSLLEPESELYNTG 180
           GGTEIVSIMFEMKNESDRTATKNRNEDFLKELDKDRQEKGCEYAVLVS+LEP+SELYNTG
Sbjct: 269 GGTEIVSIMFEMKNESDRTATKNRNEDFLKELDKDRQEKGCEYAVLVSMLEPDSELYNTG 328

Query: 181 IVDVFHRYPKMYVVRPQFFIPIITLLRNAALNSLKYKNELAVVKAQNIDITNFESELDTF 240
           IVDVFHRYPKMYVVRPQFFIPIITLLRNAALNSLKYKNELA+VKAQNIDITNFESELDTF
Sbjct: 329 IVDVFHRYPKMYVVRPQFFIPIITLLRNAALNSLKYKNELALVKAQNIDITNFESELDTF 388

Query: 241 KAAFAKNYDLASRRFQTAIDEIDKSIDHLQKTKEALLGTDRNLRLANDKAQDVTIKRLTR 300
           KAAFAKNYDLASRRFQTAIDEIDKSIDHLQKTKEALLGTDRNLRLANDKAQDVTIKRLTR
Sbjct: 389 KAAFAKNYDLASRRFQTAIDEIDKSIDHLQKTKEALLGTDRNLRLANDKAQDVTIKRLTR 448

Query: 301 GNPTMAAKFAEVKKDPSDDEQ 321
           GNPTMAAKFAE+ K+ S+D Q
Sbjct: 449 GNPTMAAKFAEINKEQSEDGQ 469


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 776,594
Number of extensions: 27237
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 236
Effective length of database: 1,217,395
Effective search space: 287305220
Effective search space used: 287305220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)