BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0077.p
         (253 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312725|ref|YP_003776817.1| uncharacterized paraquat-induci...   393   e-111
gi|300312726|ref|YP_003776818.1| paraquat-inducible A protein [H...    66   3e-12

>gi|300312725|ref|YP_003776817.1| uncharacterized paraquat-inducible
           A protein [Herbaspirillum seropedicae SmR1]
          Length = 236

 Score =  393 bits (1009), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/221 (87%), Positives = 203/221 (91%)

Query: 15  LTQEPDEDLPVQDAASLGVIGCHHCGTVWEGAQPHQACGVCHAPLHVRKIDSLTRTWALL 74
           L ++  +DLPVQ AASL VIGCHHCGTVW+ AQ  + CGVCHAPLHVRKIDSLTRTWALL
Sbjct: 15  LAEDGAQDLPVQQAASLDVIGCHHCGTVWQDAQAGERCGVCHAPLHVRKIDSLTRTWALL 74

Query: 75  IAACIMYIPANMMPVMVTSTLFDEQRDTILSGVIYFWTSGEWGLALVVFVASFLVPLFKL 134
           IAACIMYIPAN+MPVMVT TLFDEQRDTILSGVIYFWTSGEWGLALVVFVASFLVPLFKL
Sbjct: 75  IAACIMYIPANLMPVMVTRTLFDEQRDTILSGVIYFWTSGEWGLALVVFVASFLVPLFKL 134

Query: 135 VALGILVFSARRRSRWRRLQRAKLYRVVEAIGRWSMLDVFVVSVLTGLVKIHGFANIHAG 194
           VALGILVFSARRRSRW+RLQRAKLYR+VEAIGRWSMLDVFVVSVLTGLVKIHGFANIHAG
Sbjct: 135 VALGILVFSARRRSRWQRLQRAKLYRLVEAIGRWSMLDVFVVSVLTGLVKIHGFANIHAG 194

Query: 195 IGIAAFGAVVVLTMLASLAFDPRLIWDERPTDPAADVSSEP 235
           IGIAAFGAVVVLTMLASLAFDPRLIWD+    P A+   EP
Sbjct: 195 IGIAAFGAVVVLTMLASLAFDPRLIWDDADPTPPANKKQEP 235


>gi|300312726|ref|YP_003776818.1| paraquat-inducible A protein
           [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 9/193 (4%)

Query: 33  VIGCHHCGTVWE----GAQPHQACGVCHAPLHVRKIDSLTRTWALLIAACIMYIPANMMP 88
           +I C  C  V++    G +    C  CHA L       L     L I A I+++ AN+ P
Sbjct: 7   LIVCEECDAVYQRPTLGQREVARCLRCHAELERDTGRRLEHLLPLTIGALILFVIANVFP 66

Query: 89  VMVTSTLFDEQRDTILSG-VIYFWTSGEWGLALVVFVASFLVPLFKLVALGILVFSARRR 147
           + VT  L     DT L G V+     G   +AL+V   + L P+ +L  L  L+    RR
Sbjct: 67  I-VTIELQGLSADTTLMGAVVALTRDGMSEVALLVLATTLLFPMIQLFVLLYLLMPGSRR 125

Query: 148 SRWRRLQRAKLYRVVEAIGRWSMLDVFVVSVLTGLVKIHGFANIHAGIGIAAFGAVVVLT 207
            R        L R+++    W M++VF++ +L  L+K+   A +  G  + +FG + VL 
Sbjct: 126 QRPPGF--VLLLRLMQVARPWGMIEVFMLGILVALIKLSNIAEVIPGPALWSFGGLTVL- 182

Query: 208 MLASLAFDPRLIW 220
           +   ++F+PR +W
Sbjct: 183 LTVVVSFNPRYLW 195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 675,774
Number of extensions: 23166
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 2
Length of query: 253
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,226,865
Effective search space: 208567050
Effective search space used: 208567050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)