BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0074.p (520 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 815 0.0 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 424 e-120 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 420 e-118 gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis pro... 420 e-118 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 412 e-116 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/586 (73%), Positives = 463/586 (79%), Gaps = 69/586 (11%) Query: 1 MRFNNLNISTRLAIGFSALIVVIAAIVTLSLARLGDINESLELVVNDRYKKINIVNAISG 60 MRFNNL+I+TRLAI FS LI+VIA IV L LARL DIN++L+LVVNDRYKKI I+N ISG Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 61 KVDDVAISLRNQLFMTDPAQIENERKNIETLSAENTKLYDELGRLITNPEARAKFDKVTE 120 KVDDVAISLRNQL MTDPAQI E+K IE+LSAENTKLYDEL RL+ NPEA+AK DKVTE Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDKVTE 120 Query: 121 TRKSYAALRKEIDRLATTGEKDTAIKLMLEKMVPLQKQYFGQLDDLSDMQQKLMDKSVAD 180 TRKSYAALRK+ID+L ++G+KD AIKLML +MVPLQK YF QLD+LSD QQKLMD+SV Sbjct: 121 TRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQ 180 Query: 181 AEVTYTITRNIMLVSGVLAALFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIDAH 240 AE Y TR IM+++GVLAA FAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVI AH Sbjct: 181 AEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIAAH 240 Query: 241 STDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEE 300 S DETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEE Sbjct: 241 SNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEE 300 Query: 301 TASSLEQLTSSVKQNADHTRKSSELAGNATQVANQGGQAVKQVVQTMGAINDSSRKIVDI 360 TASSLE+LTSSVKQNADHTRKSSELA NA+QVANQGG AVKQVVQTMGAINDSS KIVDI Sbjct: 301 TASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAINDSSHKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDS Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDS 420 Query: 421 VGQVTAGTELVAQAGSTMDEVVQSIEQVSHIVGEISAATREQSDGIEQVXSKKKK----- 475 V QVT+GTELVAQAGSTMD VV SIEQVSHIVGEISAATREQSDGIEQV + Sbjct: 421 VNQVTSGTELVAQAGSTMDAVVNSIEQVSHIVGEISAATREQSDGIEQVNQAIMQMDNTT 480 Query: 476 ---------------------------------------APAAALPGKPAPVKPQAVRAP 496 PA P APV P + Sbjct: 481 QQNAALVEEAAAAAQALQDQAQRLLDLVGVFRLDEVGGSGPA---PSAVAPVAPVLRKVS 537 Query: 497 AAAP-APRALPA---------------------SSKEEKSEEWETF 520 AAAP A ++LPA S +E+KSEEWETF Sbjct: 538 AAAPRATKSLPAKPAAPAVTNAPAAPAAPALPASKREDKSEEWETF 583 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 424 bits (1090), Expect = e-120, Method: Compositional matrix adjust. Identities = 243/469 (51%), Positives = 327/469 (69%) Query: 1 MRFNNLNISTRLAIGFSALIVVIAAIVTLSLARLGDINESLELVVNDRYKKINIVNAISG 60 M+ +++ IS RL F+ALIVV+ I + + L ++++ + +VNDRY K+ + I+ Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 KVDDVAISLRNQLFMTDPAQIENERKNIETLSAENTKLYDELGRLITNPEARAKFDKVTE 120 KV+ A SLRN + +P + + ++T +++ ++ E+ + P + + Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 TRKSYAALRKEIDRLATTGEKDTAIKLMLEKMVPLQKQYFGQLDDLSDMQQKLMDKSVAD 180 R Y+ R ++ L ++D A + +K +P+Q +YF + ++ Q LMDKS Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 AEVTYTITRNIMLVSGVLAALFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIDAH 240 A + NIMLV +A L +A A I+RSITRPL+ AV+VA VAAGDLT I+A Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 STDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEE 300 S DETG LL AL +MN L IV EVR GTD++ TAS +IATGNLDLSSRTE+QA ALEE Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEE 301 Query: 301 TASSLEQLTSSVKQNADHTRKSSELAGNATQVANQGGQAVKQVVQTMGAINDSSRKIVDI 360 TAS++E+LTS+V+QNAD+ R+++ LA A+QVA QGG V +VVQTMG IND+SRKIVDI Sbjct: 302 TASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDI 361 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK LI+ S Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDAS 421 Query: 421 VGQVTAGTELVAQAGSTMDEVVQSIEQVSHIVGEISAATREQSDGIEQV 469 V +V +G+ LV QAG+TM+EVV S+++V+ +V EI+AA+ EQSDGIEQ+ Sbjct: 422 VERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQI 470 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 420 bits (1079), Expect = e-118, Method: Compositional matrix adjust. Identities = 247/472 (52%), Positives = 324/472 (68%), Gaps = 6/472 (1%) Query: 1 MRFNNLNISTRLAIGFSALIVVIAAIVTLSLARLGDINESLELVVNDRYKKINIVNAISG 60 M+ ++ IS RLA+ F+ LI V+ I + + L I++S L+V DRY+KI + I Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 KVDDVAISLRNQLFMTDPAQIENERKNIETLSAENTKLYDELGRL---ITNPEARAKFDK 117 V+ A +LRN L + +E + ++ +A + K + LG++ ++ R F Sbjct: 61 NVNGAARNLRNALLGRN---LEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQS 117 Query: 118 VTETRKSYAALRKEIDRLATTGEKDTAIKLMLEKMVPLQKQYFGQLDDLSDMQQKLMDKS 177 + E R +Y R ++ L +K+ A++L+ +++P Q +YF LD Q+ LM++S Sbjct: 118 IQEARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQS 177 Query: 178 VADAEVTYTITRNIMLVSGVLAALFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVI 237 V + T +ML +A AW ++RSITRPL+ AV VA VAAGDLT I Sbjct: 178 VTEGRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQI 237 Query: 238 DAHSTDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASA 297 A S DETG LL AL +MN L IV EVR+G+D++ TAS +IATGNLDLSSRTEEQA A Sbjct: 238 GATSKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGA 297 Query: 298 LEETASSLEQLTSSVKQNADHTRKSSELAGNATQVANQGGQAVKQVVQTMGAINDSSRKI 357 LEETAS++E+LTS+VKQNAD+ R+++ LA A++VA QGG V QVVQTMG IND+SRKI Sbjct: 298 LEETASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKI 357 Query: 358 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELI 417 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK LI Sbjct: 358 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALI 417 Query: 418 NDSVGQVTAGTELVAQAGSTMDEVVQSIEQVSHIVGEISAATREQSDGIEQV 469 +DSV +V G+ LV QAG+TM EVV S+ +V+ +V EISAA+ EQSDGIEQ+ Sbjct: 418 DDSVSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQI 469 >gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 534 Score = 420 bits (1079), Expect = e-118, Method: Compositional matrix adjust. Identities = 238/469 (50%), Positives = 325/469 (69%) Query: 1 MRFNNLNISTRLAIGFSALIVVIAAIVTLSLARLGDINESLELVVNDRYKKINIVNAISG 60 M+ +N+ I RL +GF L+V++ A+ +ARLG +N ++ V++D+Y K + I Sbjct: 1 MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNAQMKDVIHDKYPKTVVAGDIVD 60 Query: 61 KVDDVAISLRNQLFMTDPAQIENERKNIETLSAENTKLYDELGRLITNPEARAKFDKVTE 120 +++ +A S+RN L + QI++E + I + +L +L+T+ ++RA + Sbjct: 61 QLNLIARSVRNILLLKREPQIKSEYERISGADRAIREDLAQLDKLLTDGDSRAALTTLVT 120 Query: 121 TRKSYAALRKEIDRLATTGEKDTAIKLMLEKMVPLQKQYFGQLDDLSDMQQKLMDKSVAD 180 + +Y R ++ + G K+ AI ++++++ P+Q D L Q ++M + + Sbjct: 121 AQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMNAADALIRQQHEMMKTAGDE 180 Query: 181 AEVTYTITRNIMLVSGVLAALFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIDAH 240 E Y R ++L+ AA IAW I+RSIT PL RAV VAETVAAGDLT+ IDAH Sbjct: 181 VESNYAQARTLLLLLAAAGLAAAAVIAWMITRSITAPLDRAVRVAETVAAGDLTSAIDAH 240 Query: 241 STDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEE 300 DET LL+AL MN +L IV +VR TD++ TAS++IA GNLDLSSRTEEQA++LEE Sbjct: 241 GRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAASLEE 300 Query: 301 TASSLEQLTSSVKQNADHTRKSSELAGNATQVANQGGQAVKQVVQTMGAINDSSRKIVDI 360 TASS+EQLT++VKQNA H ++S+LAG+A+ +A QGG+ V VV+TMGAI+ SS+KIVDI Sbjct: 301 TASSMEQLTATVKQNASHAGQASQLAGSASDIARQGGEVVGHVVETMGAIDASSKKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDS 420 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSATAA EIK LI DS Sbjct: 361 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAHEIKALIADS 420 Query: 421 VGQVTAGTELVAQAGSTMDEVVQSIEQVSHIVGEISAATREQSDGIEQV 469 V +V G++LV QAG TM EVVQS+++V +V EIS+A +EQS GIEQV Sbjct: 421 VARVGNGSKLVEQAGRTMHEVVQSVQRVGEVVNEISSAGQEQSAGIEQV 469 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 412 bits (1060), Expect = e-116, Method: Compositional matrix adjust. Identities = 238/467 (50%), Positives = 321/467 (68%) Query: 3 FNNLNISTRLAIGFSALIVVIAAIVTLSLARLGDINESLELVVNDRYKKINIVNAISGKV 62 NL I RLAIGF AL++++A +V L + RLG I ++ + + KK + Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 63 DDVAISLRNQLFMTDPAQIENERKNIETLSAENTKLYDELGRLITNPEARAKFDKVTETR 122 + + + D A +K I+ SA ++L E+ IT+ E + FD+V + R Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 123 KSYAALRKEIDRLATTGEKDTAIKLMLEKMVPLQKQYFGQLDDLSDMQQKLMDKSVADAE 182 +Y A R+ I + T G+ A ++ +V + Y + +D Q++++D++ A Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 183 VTYTITRNIMLVSGVLAALFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIDAHST 242 Y R+++L G + + A +AW ++RSITRPL++AV +AETVAAGDLT+ ID+ S Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSR 240 Query: 243 DETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEETA 302 DETG+LL AL MN L IV VR GT+++ TAS +IATGNLDLS+RTE QA +LEETA Sbjct: 241 DETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETA 300 Query: 303 SSLEQLTSSVKQNADHTRKSSELAGNATQVANQGGQAVKQVVQTMGAINDSSRKIVDIIS 362 S++EQLTS+VKQNAD+ R+++ELA +A+QVA QGG V QVV TMGAI+ SS+KI DII Sbjct: 301 SAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIG 360 Query: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDSVG 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK+LI+DSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVE 420 Query: 423 QVTAGTELVAQAGSTMDEVVQSIEQVSHIVGEISAATREQSDGIEQV 469 +V G+ LVA+AG TM EVVQS+ +V+ +V EI+ A++EQSDGIEQV Sbjct: 421 KVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQV 467 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.125 0.323 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,075,528 Number of extensions: 36976 Number of successful extensions: 599 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 389 Number of HSP's successfully gapped: 72 Length of query: 520 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 431 Effective length of database: 1,198,455 Effective search space: 516534105 Effective search space used: 516534105 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)