BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0072.p
         (340 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312731|ref|YP_003776823.1| hypothetical protein Hsero_3435...   532   e-152

>gi|300312731|ref|YP_003776823.1| hypothetical protein Hsero_3435
           [Herbaspirillum seropedicae SmR1]
          Length = 457

 Score =  532 bits (1371), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 252/319 (78%), Positives = 279/319 (87%), Gaps = 7/319 (2%)

Query: 28  ATAATIDAVIDAAVQQVNHRPRERLGDRYRRLRRQSLLIAEPLSAEDCCVQAMPDASPIK 87
           AT+A IDAVIDAA+ Q+NHR RE+LGDRYRRLRRQSL+IAEPLS EDCCVQAMPDASP+K
Sbjct: 23  ATSAVIDAVIDAALHQLNHRSREKLGDRYRRLRRQSLVIAEPLSPEDCCVQAMPDASPVK 82

Query: 88  WHLAHTTWFFETFLLERFQSGFTPFHPQFRVLFNSYYEGVGEKFPRPQRGLLTRPSLDDI 147
           WHLAHTTWFFETFLLERF+SGF PFHPQFR+LFNSYYEGVGE+FPRPQRG+LTRP+L ++
Sbjct: 83  WHLAHTTWFFETFLLERFESGFKPFHPQFRMLFNSYYEGVGERFPRPQRGMLTRPALAEV 142

Query: 148 LAYREQVDARMLLLIDALEADPAEAE-------EAHPQLAGFLSLLELGMQHEQQHQELM 200
           LAYREQVD RMLLLIDAL+A+ A          +A PQLA FLSLLELGMQHEQQHQELM
Sbjct: 143 LAYREQVDQRMLLLIDALDANGASTSAVAAGGGDAQPQLAQFLSLLELGMQHEQQHQELM 202

Query: 201 LTDIKILLSMNPLQPAYQPLPMNLQLDDPAALELQWHRIEAGVVEIGHAGSGFCFDNETP 260
           LTDIK+LLS+NPLQPAYQPLP ++ LDDPA L LQWHRIEAGVVEIGHAG GFCFDNETP
Sbjct: 203 LTDIKMLLSLNPLQPAYQPLPESVPLDDPAELALQWHRIEAGVVEIGHAGPGFCFDNETP 262

Query: 261 RHRQFVEAYQCASRLVNNAEYLAFVEAGGYEDAGLWLSEGWEWKKQEGLSHPLYWRRGVD 320
           RHRQFVEAYQCASRLVNNAEYL F++AGGY+D  LWL+EGW+WK+Q  L HPLYWRR   
Sbjct: 263 RHRQFVEAYQCASRLVNNAEYLDFIQAGGYQDPSLWLAEGWDWKEQLALRHPLYWRRDAQ 322

Query: 321 GQWREFTEYGAQPLSKHES 339
           GQW EFTEYG Q L  H +
Sbjct: 323 GQWSEFTEYGVQALQPHRA 341


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 996,374
Number of extensions: 39909
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,212,660
Effective search space: 308015640
Effective search space used: 308015640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)