BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0071.p
         (324 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312732|ref|YP_003776824.1| hypothetical protein Hsero_3436...   476   e-135

>gi|300312732|ref|YP_003776824.1| hypothetical protein Hsero_3436
           [Herbaspirillum seropedicae SmR1]
          Length = 322

 Score =  476 bits (1225), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/324 (72%), Positives = 263/324 (81%), Gaps = 2/324 (0%)

Query: 1   LAQSALIPSSREAAPEARAPHAELLAGLAAREAVISPKYFYDPLGSKLFEAICALPEYYP 60
           +AQ ALIP+  ++  E R   AEL+ GL A  A ISPKYFYD LGSKLFEAICALPEYYP
Sbjct: 1   MAQPALIPADLDSLSEDRQRRAELVTGLTAPAAFISPKYFYDVLGSKLFEAICALPEYYP 60

Query: 61  TRTEAAIFAAHQEAIAAAVGQSCTLIDLGAGNCIKAASLFEALRPRQYVPVDISTDFLHQ 120
           TRTEAAIFA H++ IAAAVGQ   LIDLGAGNC KAASLF ALRPRQYVPVDIS  FL Q
Sbjct: 61  TRTEAAIFAEHRDEIAAAVGQDACLIDLGAGNCAKAASLFAALRPRQYVPVDISAQFLQQ 120

Query: 121 SVAGLQKRFPQLPMLPLAMDFSATLALPETVDAQRRLFFYPGSSLGNFDPAQALDFLRRV 180
           SVAGLQ+RFP +PMLPL MDFS+TLALP  V  +RRLFFYPGSSLGNFD  +AL FLRR+
Sbjct: 121 SVAGLQRRFPDIPMLPLGMDFSSTLALPAQVQRERRLFFYPGSSLGNFDRDEALVFLRRL 180

Query: 181 RAALPAGPGEGGILIGLDLVKDARFLEAAYDDAIGVTAAFNLNVLNHVNALAGTDFAPRD 240
           RAALP     GG+L+GLDLVK +  LEAAYDDA+GVTAAFNLN LNH+N L G DF  RD
Sbjct: 181 RAALP--DAAGGVLLGLDLVKPSAVLEAAYDDALGVTAAFNLNALNHINGLLGADFNARD 238

Query: 241 WRHVAFYNARQQRIEMHLEARRDLIVRWPGGRRTFHQGERIHTEYSHKFTEQDILGLLEE 300
           WRH+AFY+  QQR+EMHLEARRDLIVRWPGGRRTF QGERIHTE SHKF   +I  LL +
Sbjct: 239 WRHLAFYDEAQQRVEMHLEARRDLIVRWPGGRRTFRQGERIHTENSHKFRADEIADLLAQ 298

Query: 301 AGFGNCRMWFDERRWFAVCHAQAR 324
           AGFG+C+MW D +RWFAVCHA+ R
Sbjct: 299 AGFGDCQMWCDPQRWFAVCHARPR 322


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 929,967
Number of extensions: 37740
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,217,395
Effective search space: 290957405
Effective search space used: 290957405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)