BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0070.p (596 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 1015 0.0 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 306 5e-84 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 304 1e-83 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 301 1e-82 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 273 3e-74 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 1015 bits (2624), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/593 (92%), Positives = 564/593 (95%) Query: 4 AVDSPTARKSALAALRGLAPFLAPYKKQFLLAGLALLVAAGATLAVPYAFKQMIDLGFGA 63 A DSPTARKSALAALRGL PFLAPYKKQFLLAGLAL+VAA ATLAVPYAFKQMIDLGFGA Sbjct: 22 AADSPTARKSALAALRGLLPFLAPYKKQFLLAGLALVVAAAATLAVPYAFKQMIDLGFGA 81 Query: 64 AGSKSATHINLYFVALFGVACVLGVATAARFYMVSWLGERVTADLRSAVYAHVVTQSPEF 123 AGSKSA+HINLYF+ALFGVAC+LGVATA RFYMVSWLGERVTADLRSAVYAHVVTQSPEF Sbjct: 82 AGSKSASHINLYFLALFGVACILGVATALRFYMVSWLGERVTADLRSAVYAHVVTQSPEF 141 Query: 124 FETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFLGGMSMLFITSAKLTSIIIVML 183 FETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLF+GGMSMLF TSA+LTSIIIVML Sbjct: 142 FETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFIGGMSMLFFTSARLTSIIIVML 201 Query: 184 AAVVLPIVFYGRRVRKLSRASQDRVADAAAMAGEILNAMPTVQAFTHEEIEARRFGDSVE 243 AAVVLPIVFYGRRVRKLSRASQDRVADA+AMAGEILNAMPTVQAFTHEEIEARRF SVE Sbjct: 202 AAVVLPIVFYGRRVRKLSRASQDRVADASAMAGEILNAMPTVQAFTHEEIEARRFAQSVE 261 Query: 244 RAFQTAMDRIRARSLLTVVAILLVFGAIVFVLWLGAHAVMQGSMSGGELGQFILYASLVA 303 RAF TAM+R+RARSLLTVVAILLVFGAIVFVLWLGAHAVM+GSMSGGELGQFILYASLVA Sbjct: 262 RAFGTAMERVRARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQFILYASLVA 321 Query: 304 GSLGALSEVMGDTQRAAGATERLLDLLAAQSPVQSVLLPEKLPPGTANGAALQIEAVDFH 363 GSLGALSEVMGDTQRAAGATERLLDLLAA SPVQSVLLPEKLPP TANGAAL ++ VDFH Sbjct: 322 GSLGALSEVMGDTQRAAGATERLLDLLAAHSPVQSVLLPEKLPPRTANGAALTVQGVDFH 381 Query: 364 YPSRPGSASLSGFSLDVRAGETVAVVGPSGAGKTTLFQLLLRFYDPQQGSIRLDGVDIRY 423 YPSRPG SL+ SL V+ GETVA+VGPSGAGKTTLFQLLLRFYDPQQG I LDGVDIRY Sbjct: 382 YPSRPGHPSLTQLSLTVQPGETVAIVGPSGAGKTTLFQLLLRFYDPQQGQILLDGVDIRY 441 Query: 424 LTLQDLRNAIGIVPQDTVIFSANAMENIRFGRPGASDAEVIAAAQMAAAHEFIERLPDGY 483 L LQ LR AIGIVPQDTVIFSANAMENIRFGRP ASDAEVIAAAQMAAAHEFIERLP Y Sbjct: 442 LDLQALRGAIGIVPQDTVIFSANAMENIRFGRPEASDAEVIAAAQMAAAHEFIERLPGSY 501 Query: 484 QCFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVGR 543 CFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQ ALEAAMVGR Sbjct: 502 ACFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGALEAAMVGR 561 Query: 544 TTLVIAHRLATVQRADRIIVLEHGRIVETGTHAELVARDGLYASLAALQFETQ 596 TTLVIAHRLATVQRADRIIVLEHGRIVE+GTHAELVARDGLYA LAALQF+TQ Sbjct: 562 TTLVIAHRLATVQRADRIIVLEHGRIVESGTHAELVARDGLYAGLAALQFQTQ 614 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 306 bits (783), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 216/579 (37%), Positives = 312/579 (53%), Gaps = 9/579 (1%) Query: 18 LRGLAPFLAPYKKQFLLAGLALLVAAGATLAVPYAFKQMIDLGFGAAGSKSATHINLYFV 77 ++ LA PYKK+ +A +A++V A VPY F+ ++D GF K A + L V Sbjct: 6 MKRLAALHWPYKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFVG---KPAFSLWLVPV 62 Query: 78 ALFGVACVLGVATAARFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEVLSRLT 137 A+ G+ + G+AT YM++W+ R+ +LR ++A ++ F+ T G+V++ + Sbjct: 63 AVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSMM 122 Query: 138 TDTTLIQTLVGTSISMALRNALLFLGGMSMLFITSAKLTSIIIVMLAAVVLPIVFYGRRV 197 + I +V + LR+AL LG ++ L + LT + +V+L V L + G+R+ Sbjct: 123 FEVQQIIDMVTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKRL 182 Query: 198 RKLSRASQDRVADAAAMAGEILNAMPTVQAFTHEEIEARRFGDSVERAFQTAMDRIRARS 257 +KL+R S A+ + E A ++ F ++ E RF E M A S Sbjct: 183 KKLNRDSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAAFS 242 Query: 258 LLTVVAILLVFGAIVFVLWLGAHAVMQGSMSGGELGQFILYASLVAGSLGALSEVMGDTQ 317 + L+ A+ V+ + G ++ G FI ++ L L+E+ G Q Sbjct: 243 STVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQ 302 Query: 318 RAAGATERLLDLLAAQSPVQSVLLPEKLPPGTANGAALQIEAVDFHYPSRPGSASLSGFS 377 R A E + L+ + E L G A G L V F YP A L + Sbjct: 303 RGMAAAEEVYKLI---DKTTERITGEALA-GRATGQ-LDFVEVGFAYPGHEQLA-LKNIN 356 Query: 378 LDVRAGETVAVVGPSGAGKTTLFQLLLRFYDPQQGSIRLDGVDIRYLTLQDLRNAIGIVP 437 L V AGET+A VG SG GK+TL L+ FY G IRLDG DI ++L LR I +V Sbjct: 357 LHVEAGETIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQIAMVN 416 Query: 438 QDTVIFSANAMENIRFGRPGASDAEVIAAAQMAAAHEFIERLPDGYQCFLGERGVRLSGG 497 Q+TV+F NI +G A V AA + A + + LP+G Q LG+ G RLSGG Sbjct: 417 QNTVLFDDTLAANIAYGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDNGSRLSGG 476 Query: 498 QRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVGRTTLVIAHRLATVQR 557 QRQR+AIARA+ K+ P+L+LDEATSALD ESER VQ+AL+ M GRTT VIAHRL+T++R Sbjct: 477 QRQRVAIARAIYKDAPILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIER 536 Query: 558 ADRIIVLEHGRIVETGTHAELVARDGLYASLAALQFETQ 596 ADRI+VL HG+I E GTH L+ ++G+YA+L LQF Q Sbjct: 537 ADRIVVLAHGQIAEIGTHQALLEQEGVYANLYRLQFSQQ 575 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 304 bits (779), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 213/590 (36%), Positives = 328/590 (55%), Gaps = 31/590 (5%) Query: 17 ALRGLAPFLAPYKKQFLLAGLALLVAAGATLAVPYAFKQMID---LGFGAAGSKSATHI- 72 AL L+ F PYK LL L L + ATL PY ++D + F G+ TH+ Sbjct: 167 ALFRLSRFAKPYKGSLLLGFLLTLASTAATLVPPYMTMPLMDNVLIPF-QNGAPIDTHLA 225 Query: 73 NLYFVALFGVACVLGVATAARFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKTGEV 132 LY L G A + AR Y+++ + ER+ ADLR+ Y+H++ S E+F +TG++ Sbjct: 226 TLYLSGLLGAAVLAWGLGWARTYILALVSERIGADLRTTTYSHLLRLSQEYFGGKRTGDL 285 Query: 133 LSRLTTDTTLIQTLVGTSISMALRNALLFLGGMSMLFITSAKLTSIIIVMLAAVVLPIVF 192 ++R+ ++T I + + L F + M+ +T+A L SI + +LP+ F Sbjct: 286 MARIGSETDRICVFLSLHL-------LDFAIDVLMIIMTAAILISINPWLALVTLLPLPF 338 Query: 193 YGRRVR----KLSRASQ--DRV-ADAAAMAGEILNAMPTVQAFTHEEIEARRFGDSVERA 245 + +L + DR+ ++ + + + + V+AF E+ E RF ++ R Sbjct: 339 IAWMIHVVRDRLRHGFEKIDRIWSEVTNVLADTIPGIRVVKAFAQEKREVARFREA-NRH 397 Query: 246 FQTAMDRI-RARSLLTVVAILLVFGAIVFVLWLGAHAVMQGSMSGGELGQFILYASLVAG 304 DR+ + SL T L ++ V G V ++ G L F+ Y S Sbjct: 398 NLMVNDRVNKIWSLFTPTVTFLTEVGLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYT 457 Query: 305 SLGALSEVMGDTQRAAGATERLLDLLAAQSPVQSVLLPEKLPPGTANG--AALQIEAVDF 362 L ++S ++ TQ+AA +R+ D+L S V PE P A+++ + F Sbjct: 458 RLDSMSRIVSVTQKAAAGAKRIFDILDHVSSV-----PEPANPVHLEKVQGAIEVRNIGF 512 Query: 363 HYPSRPGSASLSGFSLDVRAGETVAVVGPSGAGKTTLFQLLLRFYDPQQGSIRLDGVDIR 422 Y +R A + SL + GE + +VG SG+GK+T+ L+ RFYD +G+IR+DGVDIR Sbjct: 513 RYGNR---AVIRNMSLSIAPGEMIGLVGHSGSGKSTMVNLICRFYDVSEGAIRIDGVDIR 569 Query: 423 YLTLQDLRNAIGIVPQDTVIFSANAMENIRFGRPGASDAEVIAAAQMAAAHEFIERLPDG 482 L + + R IG+V Q+ +F ENI +G+P A+ E+IAAA+ A AHEFI RLP G Sbjct: 570 SLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEATREEIIAAARAAHAHEFILRLPQG 629 Query: 483 YQCFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVG 542 Y +GERG LSGG+RQRI+IARALL +P +L+LDEATS++D +E+ +Q AL+ + G Sbjct: 630 YDSLVGERGQALSGGERQRISIARALLIDPRILILDEATSSVDTTTEKEIQKALDNLVQG 689 Query: 543 RTTLVIAHRLATVQRADRIIVLEHGRIVETGTHAELVARDGLYASLAALQ 592 RTT+ IAHRL+T+++ADR++VL+ G++VE G H EL+AR+G Y L Q Sbjct: 690 RTTIAIAHRLSTLRKADRLVVLDRGQVVEVGNHEELMAREGHYYKLYQAQ 739 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 301 bits (771), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 215/590 (36%), Positives = 310/590 (52%), Gaps = 40/590 (6%) Query: 18 LRGLAPFLAPYKKQFLLAGLALLVAAG-ATLAVPYAFKQMIDLGFGAAGSKSATHINLYF 76 +R L P+L YK + LLA LA LV A A + VP K+++D A + + TH Sbjct: 25 VRTLLPYLWTYKWRVLLA-LAFLVGAKLANVGVPLVLKRLVD-----AMTITPTHPQALL 78 Query: 77 VALFGVACVLG-------VATAARFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKT 129 V G+ G + T R M + + +R + V+ H+ S F +T Sbjct: 79 VLPLGLLVAYGALRLATALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQT 138 Query: 130 GEVLSRLTTDTTLIQTLVG--------TSISMALRNALLFLGGMSMLFITSAKLTSIIIV 181 G + + T + +LV T I +AL A L + +A I+ Sbjct: 139 GGMTRDIERGTRGVSSLVSYTLFSILPTLIEIALVLAYLITHYDVWFSVITAGALVCYIL 198 Query: 182 MLAAVVLPIVFYGRRVRKLSRASQDRVADAAAMAGEILNAMPTVQAFTHEEIEARRFGDS 241 V + R + +L + R D+ +LN TV+ F +EE EARR+ + Sbjct: 199 FTITVTEWRTHFRRTMNELDSHANTRAIDS------LLN-YETVKYFGNEEFEARRYDEG 251 Query: 242 VERAFQTAMDRIRARSLLTVVAILLVFGAIVFVLWLGAHAVMQGSMSGGEL---GQFILY 298 ++R + A+ + SLL ++ A+ +LW V+ GSM+ G++ F++ Sbjct: 252 LQRYERAAVKSQSSLSLLNTGQSAIIAIAVTLILWRATVGVIDGSMTLGDMVLVNAFMIQ 311 Query: 299 ASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAQSPVQSVLLPEKLPPGTANGAALQIE 358 + LG L + +++ ERL LL V P GA L + Sbjct: 312 LYIPLNFLGVLYR---EIKQSLADMERLFSLLEEHREVAD---SADAKPLKTQGANLHFD 365 Query: 359 AVDFHYPSRPGSASLSGFSLDVRAGETVAVVGPSGAGKTTLFQLLLRFYDPQQGSIRLDG 418 VDF Y L V+AG T AVVG SG+GK+TL +LL RFYD G+IR+DG Sbjct: 366 HVDFSYER--NRQILFDVDFTVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDG 423 Query: 419 VDIRYLTLQDLRNAIGIVPQDTVIFSANAMENIRFGRPGASDAEVIAAAQMAAAHEFIER 478 D+R +T LR AIGIVPQDTV+F+ NI +G+PGA+ +++AAA+ A H+FIE Sbjct: 424 QDLRTVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDFIES 483 Query: 479 LPDGYQCFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEA 538 LPDGY +GERG++LSGG++QR+AIAR LLK+P +L+ DEATSALD+ +E+ +Q LE Sbjct: 484 LPDGYASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEE 543 Query: 539 AMVGRTTLVIAHRLATVQRADRIIVLEHGRIVETGTHAELVARDGLYASL 588 RTTLVIAHRL+T+ A +I+VL+HGRIVE GTHA L+ GLYA + Sbjct: 544 IARERTTLVIAHRLSTIVNAQQILVLDHGRIVERGTHAGLLMAGGLYAQM 593 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 273 bits (698), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 197/599 (32%), Positives = 311/599 (51%), Gaps = 41/599 (6%) Query: 10 ARKSALAALRGLAPFLAPYKKQFLLAGLALLVAAGATLAVPYAFKQMIDLGFGAAGSKSA 69 A++S+ P + Y+K L LV L P F+ ++D + + Sbjct: 141 AQESSRFDFSWFIPAVVKYRKTLAEVLLISLVLQLIGLITPMFFQVVMD---KVLVNHAM 197 Query: 70 THINLYFVALFGVACVLGVATAARFYMVSWLGERVTADLRSAVYAHVVTQSPEFFETTKT 129 +N+ V L V T R + + ++ +L S +++H+++ +F+ + Sbjct: 198 MTLNVIAVGLIAATVFEAVLTGIRTAIFANASSKIDVELGSRLFSHLLSLPLSYFQVRRA 257 Query: 130 GEVLSRLTTDTTLIQTLVGTSISMALR--NALLFLGGMSMLFITSAKLTSIIIVMLAAVV 187 G+ ++R+ + L G ++++ L + +FLG ++ S L+ I++ + V Sbjct: 258 GDSIARVRELENIRSFLTGNAMTLVLDIMFSFVFLG---VMLWYSVSLSLIVLASIPVYV 314 Query: 188 LPIVFYGRRVRKLSRASQDRVADAAAMAGEILNAMPTVQAFTHEEIEARRFGDSVERAFQ 247 L + + +R+ ++ A+ + E L M TV+A +VE +Q Sbjct: 315 LLSLVFTPLLRERLNDKFNKSAENQSFLVETLTGMDTVKAM------------AVEPRWQ 362 Query: 248 TAMDR----IRARSLLTVVAILLVFGAI--------VFVLWLGAHAVMQGSMSGGELGQF 295 D+ A L T LL GA+ V ++WLGA V++ MS GEL F Sbjct: 363 QKWDKQLAAYVAAGLTTTNISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELVAF 422 Query: 296 ILYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAQSPVQSVLLPEKLPPGTANGAAL 355 + A VA + L+++ D Q+ + RL D+L A++ V +LP NGA + Sbjct: 423 NMLAGQVASPILRLAQLWNDFQQIGISMSRLADVLDARTEVAGN--RTRLP--RVNGA-I 477 Query: 356 QIEAVDFHYPSRPGSAS-LSGFSLDVRAGETVAVVGPSGAGKTTLFQLLLRFYDPQQGSI 414 + V F Y RP + + G SL +R GE + +VG SG+GK+TL +L+ R Y + G I Sbjct: 478 SFDLVSFRY--RPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRI 535 Query: 415 RLDGVDIRYLTLQDLRNAIGIVPQDTVIFSANAMENIRFGRPGASDAEVIAAAQMAAAHE 474 +DG DI + LR IG+V Q+ +FS + +NI P ++I AA++A AH+ Sbjct: 536 SVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLAGAHD 595 Query: 475 FIERLPDGYQCFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQS 534 FI LP+GY +GE+G LSGGQRQRIAIARAL+ NP +L+ DEATSALD ESE+++Q Sbjct: 596 FICELPEGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQD 655 Query: 535 ALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVETGTHAELVA-RDGLYASLAALQ 592 + GRT L+IAHRL+ V+ ADRIIV+E GR+ E+G+H EL+ G+YA L LQ Sbjct: 656 NMRQICAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELIDLPGGIYAHLHRLQ 714 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,629,176 Number of extensions: 62638 Number of successful extensions: 676 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 531 Number of HSP's successfully gapped: 137 Length of query: 596 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 505 Effective length of database: 1,188,985 Effective search space: 600437425 Effective search space used: 600437425 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)