BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0069.p (372 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Her... 638 0.0 gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbasp... 278 4e-76 gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH... 145 6e-36 >gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/372 (85%), Positives = 342/372 (91%) Query: 1 MSSQLFSPLTLRGVTLPNRIAVSPMCQYSAEDGFVNDWHLVHLGSRAVGGAGLVIMEATA 60 MSS LFSPL LRGVTLPNRIAVSPMCQYSAEDGFVNDWHLVHLGSRAVGGAGLV+MEATA Sbjct: 1 MSSHLFSPLPLRGVTLPNRIAVSPMCQYSAEDGFVNDWHLVHLGSRAVGGAGLVLMEATA 60 Query: 61 VVPEGRITSADLGIWKDEHVAPLRRITRFIEQQGAVPGIQLAHAGRKASALRPWDGPAGS 120 VV EGRI+SADLGIWKDEH+APLRRITRFIEQQGAVPGIQLAHAGRK+S LRPWDGPAGS Sbjct: 61 VVAEGRISSADLGIWKDEHIAPLRRITRFIEQQGAVPGIQLAHAGRKSSILRPWDGPAGS 120 Query: 121 VPVAEGGWLPQAPSALPFDTTYTEPHAMSAAEIAALVQAFADAARRALAAGFKVIELHGA 180 VP + GGW PQAPSALPFD Y+ P AMS +I ALVQAFADAA+RALAAGFKVIELHGA Sbjct: 121 VPPSAGGWTPQAPSALPFDDGYSTPQAMSVEQIGALVQAFADAAQRALAAGFKVIELHGA 180 Query: 181 HGYLGHQFLSPLSNKRTDQYGGSFENRIRFLLETVQATRAVWPAELPLLVRLSATDWTEG 240 HGYLGHQFLSPLSN+R+D+YGGSFENRIRFLLE +ATRAVWP ELPLLVRLSATDW +G Sbjct: 181 HGYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLVRLSATDWVDG 240 Query: 241 GWNADDTVALSARLRDMGVDLVDVSTGGNLPSAAIPVGPGYQTGFAARVKTETGIATGTV 300 GW ++TV LS RLR++GVDLVDVS+GGN P A IPVGPGYQT FAARVK E GIA+G V Sbjct: 241 GWTPEETVTLSQRLRELGVDLVDVSSGGNAPKAVIPVGPGYQTSFAARVKAEAGIASGAV 300 Query: 301 GMITEAIQAEHVLRTGQADLVLLARELLRDPYWPLHAAQQLREDVAWPPQYVRAASSKTP 360 GMIT+AIQAEH+LRTGQADLVLLARELLRDPYWPLHAAQQLRE+VAWPPQYVRAASSKTP Sbjct: 301 GMITDAIQAEHILRTGQADLVLLARELLRDPYWPLHAAQQLREEVAWPPQYVRAASSKTP 360 Query: 361 LRPDVQYGRKEE 372 LRP+VQYG KE+ Sbjct: 361 LRPEVQYGLKEQ 372 >gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbaspirillum seropedicae SmR1] Length = 362 Score = 278 bits (712), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 155/343 (45%), Positives = 204/343 (59%), Gaps = 6/343 (1%) Query: 3 SQLFSPLTLRGVTLPNRIAVSPMCQYSAEDGFVNDWHLVHLGSRAVGGAGLVIMEATAVV 62 S LF P L+ V+L NRIAV PMCQY A +G VNDWHL H S A GGAGLVI+EATAV Sbjct: 2 SALFQPFKLKDVSLRNRIAVPPMCQYMAVEGKVNDWHLSHYASIARGGAGLVIVEATAVS 61 Query: 63 PEGRITSADLGIWKDEHVAPLRRITRFIEQQGAVPGIQLAHAGRKASALRPWDGPAGSVP 122 PEGRIT GIW D + + I+ GAVPGIQ+ HAGRKASA RPW+G Sbjct: 62 PEGRITPGCTGIWSDALGQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHIAA 121 Query: 123 VAEGGWLPQAPSALPFDTTYTE-PHAMSAAEIAALVQAFADAARRALAAGFKVIELHGAH 181 GW +PSA+ + + P AMS +IA + Q F +AA RA AGF+ +ELH AH Sbjct: 122 DDARGWDTLSPSAIAYGRGLPKVPKAMSLDDIARVRQDFVNAAVRAREAGFEWLELHFAH 181 Query: 182 GYLGHQFLSPLSNKRTDQYGGSFENRIRFLLETVQATRAVWPAELPLLVRLSATDWTEGG 241 GYLG F S +N+R D YGGS ENR RFLLET++A R VWP L L VR ++ G Sbjct: 182 GYLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAVREVWPEHLALTVRFGVLEYD--G 239 Query: 242 WNAD---DTVALSARLRDMGVDLVDVSTGGNLPSAAIPVGPGYQTGFAARVKTETGIATG 298 + + +++ + + +D G+D++ V+ G +P IP GP + A RV+ E + Sbjct: 240 RDEETLMESIGVVRQFKDSGMDMISVTIGFTIPEVQIPWGPAFLGPIAKRVREEAAVPVS 299 Query: 299 TVGMITEAIQAEHVLRTGQADLVLLARELLRDPYWPLHAAQQL 341 + AE ++ GQ DLV++ R L +P+W AA++L Sbjct: 300 SAWGFGTPALAEQAVKDGQLDLVMVGRSHLVNPHWTYQAAKEL 342 >gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 145 bits (365), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 106/284 (37%), Positives = 154/284 (54%), Gaps = 32/284 (11%) Query: 2 SSQLFSPLTLRGVTLPNRIAVSPMCQYSAEDGFV-NDWHLVHLGSRAVGGAGLVIMEATA 60 +S LF P+ L V L NRI ++P+ + A+ G V +D + RA GAGL+I EAT Sbjct: 7 NSDLFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYAQRA--GAGLIIAEATQ 64 Query: 61 VVPEGRITSADLGIWKDEHVAPLRRITRFIEQQGAVPGIQLAHAGRKASA-LRPWDGPAG 119 + PEG+ + GI+ D HVA ++IT + +G +QL H GR + L+P Sbjct: 65 ISPEGKGYAWTPGIYNDAHVAAWKKITDAVHAKGGRIFLQLWHVGRISHPDLQP------ 118 Query: 120 SVPVAEGGWLPQAPSAL-PFDTTYTE--------PHAMSAAEIAALVQAFADAARRALAA 170 G LP APSA+ P +TE P A+ AAE+ A+V+ + AA+ ++ A Sbjct: 119 ------GHALPVAPSAVQPEGQAFTESGFKPFVTPRALEAAELPAIVEQYKKAAQLSMQA 172 Query: 171 GFKVIELHGAHGYLGHQFLSPLSNKRTDQYGGSFENRIRFLLETVQATRAVWPAELPLLV 230 GF +E+H A+GYL QFL +N+RTD YGGS ENR R LLE VQA +V P+E + + Sbjct: 173 GFDGVEIHAANGYLLDQFLRDKTNQRTDGYGGSIENRARLLLEVVQAVTSVVPSER-VGI 231 Query: 231 RLSATDWTEGGWNADDTVALS------ARLRDMGVDLVDVSTGG 268 RLS ++D S R + + + +V+ +TGG Sbjct: 232 RLSPISPANDIADSDPKALFSYVVEQLNRFKLVYLHVVEGATGG 275 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,256,395 Number of extensions: 55931 Number of successful extensions: 215 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 211 Number of HSP's successfully gapped: 3 Length of query: 372 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 285 Effective length of database: 1,207,925 Effective search space: 344258625 Effective search space used: 344258625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)