BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0068.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312735|ref|YP_003776827.1| DedA transmembrane protein [Her...   308   3e-85
gi|300310171|ref|YP_003774263.1| DedA DSG-1 transmembrane protei...   189   2e-49
gi|300310491|ref|YP_003774583.1| transmembrane protein [Herbaspi...    55   4e-09

>gi|300312735|ref|YP_003776827.1| DedA transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  308 bits (788), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 163/169 (96%), Positives = 168/169 (99%)

Query: 1   MDILLFLVDFIVHIDRHLAELAVSYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGA 60
           MDILLFLVDFIVHIDRHLAELA SYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGA
Sbjct: 1   MDILLFLVDFIVHIDRHLAELAASYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGA 60

Query: 61  LAATGAYDIHLMLLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEYLEKTHAFFE 120
           LAATGAYDI+LM+LTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEYL+KTHAFFE
Sbjct: 61  LAATGAYDINLMVLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEYLDKTHAFFE 120

Query: 121 KHGGKAIIIARFAPIVRTFAPFVAGVGAMTYSRFFLYNVIGGIAWVASF 169
           KHGGKAIIIARFAPIVRTFAPFVAGVGAMTY+RFFLYNV+GGIAWVASF
Sbjct: 121 KHGGKAIIIARFAPIVRTFAPFVAGVGAMTYTRFFLYNVVGGIAWVASF 169


>gi|300310171|ref|YP_003774263.1| DedA DSG-1 transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  189 bits (479), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/166 (55%), Positives = 120/166 (72%), Gaps = 1/166 (0%)

Query: 7   LVDFIVHIDRHLAELAVSYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGALAATGA 66
           L+D +VH+D++L  L   YG  ++ +LFLI+FCETGLVV P LPGDSLLF+ G   ATGA
Sbjct: 6   LLDVLVHVDKYLGVLIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTFCATGA 65

Query: 67  YDIHLMLLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEYLEKTHAFFEKHGGKA 126
            DI L++  L+VAA+ G++ NY IG  +G +V+   N R    E L KTHAF+EKHGGK 
Sbjct: 66  MDIWLLMTLLVVAAVAGNTLNYWIGGWVGQRVYTH-NYRWLNPEALRKTHAFYEKHGGKT 124

Query: 127 IIIARFAPIVRTFAPFVAGVGAMTYSRFFLYNVIGGIAWVASFGLL 172
           I+IARF PIVRTFAPF+AGV AM+++RF L+NV+G   WV    +L
Sbjct: 125 IVIARFTPIVRTFAPFIAGVSAMSFARFQLFNVLGAFLWVVGLVVL 170


>gi|300310491|ref|YP_003774583.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score = 55.1 bits (131), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 11/158 (6%)

Query: 17  HLAELAVSYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGALAATGAYDIHLMLLTL 76
           HL E    YG    LI+F+ +  E      P  P    L +TGAL+A G Y   ++LL  
Sbjct: 6   HLIE---QYG---LLIVFVNVLVEQLGAPVPAYP---TLILTGALSAAGRYSPAVLLLVA 56

Query: 77  IVAAILGDSTNYQIGKMLGIKVFDK-PNSRIFKKEYLEKTHAFFEKHGGKAIIIARFAPI 135
           + AA+L D   Y  G+  G ++  +     +     + +T + + + G +++++A+F P 
Sbjct: 57  VCAALLADYVWYLAGRRYGRQIMSRLCRISLSPDSCVRQTESIYLRWGARSLLLAKFIPG 116

Query: 136 VRTFAPFVAGVGAMTYSRFFLYNVIGGIAWVASFGLLL 173
             + A  ++G        F L++  G   W A  G+ L
Sbjct: 117 FASIASALSGTMGTRRRSFLLWDAAGSALW-AGLGIFL 153


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.146    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 743,861
Number of extensions: 32078
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 3
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)