BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0063.p
         (225 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312741|ref|YP_003776833.1| 2-nitropropane dioxygenase [Her...   311   4e-86
gi|300312796|ref|YP_003776888.1| 2-nitropropane dioxygenase [Her...   107   9e-25

>gi|300312741|ref|YP_003776833.1| 2-nitropropane dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  311 bits (796), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 169/220 (76%), Positives = 186/220 (84%), Gaps = 3/220 (1%)

Query: 5   LLQRLGLAHPIIQAPMAGSSTVTMAAAASNAGALGSLALGASSVAQAREALAQLHALTDK 64
           L+QRLGLAHPIIQAPMAGSSTV MAAAASNAGALGSLALGAS+  QAREALAQLHALT+K
Sbjct: 7   LMQRLGLAHPIIQAPMAGSSTVVMAAAASNAGALGSLALGASNAEQAREALAQLHALTEK 66

Query: 65  PFNVNFFCHQPAVLDAARDAAWISHLQGHLDEFGGSISLPLKEIYQSFIVDTGMQQLVLE 124
           P+N+N FCHQPAVLD+ RD AW++HLQ  LDEFGG I+ PLKEIYQSF  DT MQQ+VLE
Sbjct: 67  PYNINVFCHQPAVLDSERDRAWLAHLQPLLDEFGGRIAAPLKEIYQSFNADTQMQQVVLE 126

Query: 125 LPPAVVSFHFGLPDAGVIQSLKNAGVFLMATATNLDEARQIEAAGLDAIVAQGIEAGGHR 184
             PAVVSFHFGLP A VI +L+ AG+ LMATATNLDEARQIEAAGLDAIVAQG EAGGHR
Sbjct: 127 HAPAVVSFHFGLPPADVIGALRQAGILLMATATNLDEARQIEAAGLDAIVAQGFEAGGHR 186

Query: 185 GIFDEHKDEEIGTFALVRLLATQCRL--XRAGG-ATGHGL 221
           GIFD  KDE+IG+FAL+RLL    RL    AGG   GHG+
Sbjct: 187 GIFDPTKDEQIGSFALLRLLVQHTRLPVIAAGGIMDGHGI 226


>gi|300312796|ref|YP_003776888.1| 2-nitropropane dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 358

 Score =  107 bits (267), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/205 (41%), Positives = 107/205 (52%), Gaps = 10/205 (4%)

Query: 1   MSNALLQRLGLAHPIIQAPMAGSSTVTMAAAASNAGALGSLALGASSVAQAREALAQLHA 60
           +S  L ++ G+  PI+Q PM G ST  M AA SNAG +G+LA     V   R  +  + +
Sbjct: 5   LSTPLTRKFGIDFPIVQGPMNGGSTPEMVAAVSNAGGIGALAAANFDVQTMRTKVNAIRS 64

Query: 61  LTDKPFNVNFFC-HQPAVLDAA-RDAAWISHLQGHLDEFGGSISLPLKEIYQSFIVDTGM 118
           LT KPF VN F    PA      RDA  +  LQ    E G    LP     + +  +   
Sbjct: 65  LTTKPFCVNLFVLETPAPTPGEIRDA--LDRLQPIRAELG----LPPAAAPERYCEEFRE 118

Query: 119 Q-QLVLELPPAVVSFHFGLPDAGVIQSLKNAGVFLMATATNLDEARQIEAAGLDAIVAQG 177
           Q   ++ L   V SF FGL DA  I+ L  AG  ++ TATN+ EA   +A G DAI AQG
Sbjct: 119 QLDALIALKAPVASFTFGLLDAASIERLHAAGSLVIGTATNVAEALAWQANGADAICAQG 178

Query: 178 IEAGGHRGIFDEHKDEE-IGTFALV 201
            EAGGHRG F  H D   IGT ALV
Sbjct: 179 AEAGGHRGTFIGHPDASMIGTLALV 203


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 655,787
Number of extensions: 24964
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,231,600
Effective search space: 176118800
Effective search space used: 176118800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)