BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0057.p (541 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312745|ref|YP_003776837.1| periplasmic glucans biosynthesi... 1012 0.0 gi|300314061|ref|YP_003778153.1| periplasmic glucan biosynthesis... 468 e-133 gi|300313221|ref|YP_003777313.1| periplasmic glucans biosynthesi... 343 2e-95 >gi|300312745|ref|YP_003776837.1| periplasmic glucans biosynthesis G protein [Herbaspirillum seropedicae SmR1] Length = 541 Score = 1012 bits (2617), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/541 (93%), Positives = 523/541 (96%) Query: 1 MSDKTIMLLHTTSWPREGLVSRRSAARSTWWRRLAAPATLAGLLALALPQAALAFDFNTV 60 MSDKTIMLLHTTS P + RSA RS+WWRRLA PATLAGLLALALPQAALAFDFNTV Sbjct: 1 MSDKTIMLLHTTSGPACAPLCERSALRSSWWRRLAVPATLAGLLALALPQAALAFDFNTV 60 Query: 61 AARAKALAGKSYKKPADDLPKSLKDLSYEQASQIYFRDDKSYWRAQKLPFELSFIHLGAS 120 AARAKALAGKSYKKPAD+LPKSLKDLSYEQASQIYFRDDKSYWRAQKLPFELSFIHLGAS Sbjct: 61 AARAKALAGKSYKKPADELPKSLKDLSYEQASQIYFRDDKSYWRAQKLPFELSFIHLGAS 120 Query: 121 YTEPVKINEVVGDAVREIHFNPALFDYSANRSVDPRTLRNIGFAGFRIRFPLNSAKVKDD 180 YTEP+K+NEVVGDAVREIHFNPALFDYSA RSVDPR+LRN+GFAGFR+RFP+NSAKVKDD Sbjct: 121 YTEPIKVNEVVGDAVREIHFNPALFDYSATRSVDPRSLRNLGFAGFRVRFPVNSAKVKDD 180 Query: 181 VLTFHGASYFRAMGKGQSYGLSARGLAIDTALYSGEEFPRFTEFWLERPSGDAKELVIYA 240 VLTFHGASYFRA+GKGQSYGLSARGLAIDTALYSGEEFPRFTEFWLERPS ++KELVIYA Sbjct: 181 VLTFHGASYFRALGKGQSYGLSARGLAIDTALYSGEEFPRFTEFWLERPSAESKELVIYA 240 Query: 241 LLDSPRATGAYRFVLKPGVDTAMDVKAQLYLRSNVTKLGIAPLTSMFLFGENQPGPADDF 300 LLDSPRATGAYRFVLKPG DT MDVKAQLYLRSNVTKLGIAPLTSMFLFGENQPGPADDF Sbjct: 241 LLDSPRATGAYRFVLKPGADTVMDVKAQLYLRSNVTKLGIAPLTSMFLFGENQPGPADDF 300 Query: 301 RPEVHDSDGLSMQSGTGEWLWRPLVNPKRLLVTSFSFDNPQGFGLMQRDRSFSHYEDLDY 360 RPEVHDSDGL+MQSGTGEWLWRPLVNPKRLLVTSFSFDNP GFGLMQRDRSFSHYEDLDY Sbjct: 301 RPEVHDSDGLAMQSGTGEWLWRPLVNPKRLLVTSFSFDNPLGFGLMQRDRSFSHYEDLDY 360 Query: 361 NYQSRPSAWVEPKGKWGSGRVELVQIPTPDETNDNIVAYWIPNTLPKPGQPLNVEYRLSW 420 NYQ+RPSAWVEPKGKWGSGRVELVQIPTPDETNDNIVAYWIPNTLPKPGQP NVEYRLSW Sbjct: 361 NYQARPSAWVEPKGKWGSGRVELVQIPTPDETNDNIVAYWIPNTLPKPGQPFNVEYRLSW 420 Query: 421 QKDNEKRPPLAFVTQTLFGHGYRPKQEGKQDEVQQLAIDFDGGNLKKLPANARVEGVVEA 480 QKDNEKRPPLA+VTQTLFGHGYRPKQEGK D+VQQL+IDFDGGNLKKLPANARVEGVVEA Sbjct: 421 QKDNEKRPPLAYVTQTLFGHGYRPKQEGKTDDVQQLSIDFDGGNLKKLPANARVEGVVEA 480 Query: 481 DANGKLASVTTRKNEMTGGWRVEVKLRRLEENKPVELRGFLRNANGGTTLSETWSYILPP 540 DANGKLASVTTRKNE TGGWRVEVKLRR EENKPVELRGFLRNANGGTTLSETWSYILPP Sbjct: 481 DANGKLASVTTRKNEATGGWRVEVKLRRTEENKPVELRGFLRNANGGTTLSETWSYILPP 540 Query: 541 N 541 N Sbjct: 541 N 541 >gi|300314061|ref|YP_003778153.1| periplasmic glucan biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 468 bits (1203), Expect = e-133, Method: Compositional matrix adjust. Identities = 242/509 (47%), Positives = 326/509 (64%), Gaps = 9/509 (1%) Query: 38 ATLAGLL--ALALPQAALAFDFNTVAARAKALAGKSYKKPADDLPKSLKDLSYEQASQIY 95 ATL+ L A A Q + FD N ARAK LA K Y+KP +L + + + +I Sbjct: 4 ATLSACLLAASAQAQTSQGFDLNQAVARAKDLAAKPYQKPVSNLSPTFAAMQFADYMKIQ 63 Query: 96 FRDDKSYWRAQKLPFELSFIHLGASYTEPVKINEVVGDAVREIHFNPALFDYSANRSVDP 155 + +K WR QK PF+L+F H G + PV I+E++ V+++ ++ F++ + ++ Sbjct: 64 PKSEKFEWRDQKTPFKLAFYHQGMQFNAPVAIHEIIDGRVQDVGYSTDRFNF-GDLNLAK 122 Query: 156 RTLRNIGFAGFRIRFPLNSAKVKDDVLTFHGASYFRAMGKGQSYGLSARGLAIDTALYSG 215 + ++G+AGFR+ +P+N +D+V++ GASYFR +GKGQ YGLSARGLAIDTA+ SG Sbjct: 123 DSTAHLGYAGFRVVYPINRDDKEDEVMSVLGASYFRVIGKGQVYGLSARGLAIDTAMMSG 182 Query: 216 EEFPRFTEFWLERPSGDAKELVIYALLDSPRATGAYRFVLKPGVDTAMDVKAQLYLRSNV 275 EEFP FTEFW++RP+ K+L YALLDSPRATGAY+F L PG D +DV+A+++LR V Sbjct: 183 EEFPHFTEFWIQRPAPGEKQLTFYALLDSPRATGAYKFTLTPGKDALLDVQARVFLRGEV 242 Query: 276 TKLGIAPLTSMFLFGENQPGPADDFRPEVHDSDGLSMQSGTGEWLWRPLVNPKRLLVTSF 335 +LGIAPLTSMFLFG NQ +FRP +HDS+GL++ +G GEWLWRPL +P+ + V+SF Sbjct: 243 GRLGIAPLTSMFLFGPNQQSSRRNFRPAIHDSNGLAIHTGNGEWLWRPLNDPQNVEVSSF 302 Query: 336 SFDNPQGFGLMQRDRSFSHYEDLDYNYQSRPSAWVEPKGKWGSGRVELVQIPTPDETNDN 395 NP+GFGL+QR R FS YEDL Y RPSAW+EPKG WG G V+LV+IPT DETNDN Sbjct: 303 EVSNPRGFGLLQRGREFSAYEDLKDRYDLRPSAWIEPKGDWGKGAVQLVEIPTADETNDN 362 Query: 396 IVAYWIPNTLPKPGQPLNVEYRLSWQKDNEK--RPPLAFVTQTLFGHGYRPKQEGKQ--D 451 IVAYW+P LP G PL +YR+ W D + +V QT G + + D Sbjct: 363 IVAYWLPAQLPARGTPLAYDYRIHWTMDEPAILNNEVGWVKQTFHTDGELTQANLIRAFD 422 Query: 452 EVQQLAIDFDGGNLKKLPANARVEGVVEADANGKLASVTTRKNEMTGGWRVEVKLRRLEE 511 L +DF GG L LPA V+ V NG+L V + N GWR+ ++++ Sbjct: 423 GTTALLVDFTGGPLGALPAGTPVQPQVSVSNNGELIDVQLQPNPAINGWRLTLRVKIRNV 482 Query: 512 NKPVELRGFLRNANGGTTLSETWSYILPP 540 + VELR L +AN G L+ETWSY LPP Sbjct: 483 AQAVELRAAL-SAN-GKPLTETWSYQLPP 509 >gi|300313221|ref|YP_003777313.1| periplasmic glucans biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 343 bits (880), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 207/504 (41%), Positives = 288/504 (57%), Gaps = 28/504 (5%) Query: 55 FDFNTVAARAKALAGKSYKKPADDLPKSLKDLSYEQASQIYFRDDKSYWRAQKLPFELSF 114 F F + RA+ +A Y+ A L + Y+ +I F+ D++ + PF L+F Sbjct: 44 FSFAQLIERARQMASTPYQPAAAAPAAILDRIDYDAHGKIRFKPDRAAFATGPGPFPLTF 103 Query: 115 IHLGASYTEPVKIN--EVVGDAV-----REIHFNPALFDYSAN---RSVDPRTLRNIGFA 164 HLG + PV++ E GDA RE+ + FD A+ ++ P + GFA Sbjct: 104 FHLGKFFRVPVRMFLLEGAGDATAPTQARELRYRDDYFDMPADSPAHALPPGS----GFA 159 Query: 165 GFRIRFP-LNSAKVKD----DVLTFHGASYFRAMGKGQSYGLSARGLAIDTALYS-GEEF 218 GFR + L +VKD D + F GASYFRA+G YGLSARG+AID A+ EEF Sbjct: 160 GFRFQESRLGDQQVKDWRKNDWVAFLGASYFRAIGDLYQYGLSARGVAIDVAVAGKSEEF 219 Query: 219 PRFTEFWLERPSGDAKELVIYALLDSPRATGAYRFVLKPGVDTAMDVKAQLYLRSNVTKL 278 P FT+F+ E + + +V+YALLD P TGAYRF ++ G M++ QL+LR +V +L Sbjct: 220 PDFTQFFFEPGAPGSDTVVVYALLDGPSITGAYRFAMQRGQGVTMEIDKQLFLRRDVERL 279 Query: 279 GIAPLTSMFLFGENQPGPADDFRPEVHDSDGLSMQSGTGEWLWRPLVNPKRLLVTSFSFD 338 G+AP TSM+ + E G D+RPEVHDSDGL++ +G GE LWRPL NP R + +SF+ Sbjct: 280 GLAPATSMYWYSETVKGTGVDWRPEVHDSDGLAIWNGAGEHLWRPLNNPPRTIASSFADR 339 Query: 339 NPQGFGLMQRDRSFSHYEDLDYNYQSRPSAWVEPKGKWGSGRVELVQIPTPDETNDNIVA 398 P+GFGLMQRDR F HY D +Y+ RPS WVEP G WG G+V+L+++ T DE +DNIVA Sbjct: 340 QPRGFGLMQRDRDFDHYLD-GVHYERRPSLWVEPLGDWGEGQVQLIELRTDDEIHDNIVA 398 Query: 399 YWIPNTLPKPGQPLNVEYRLSWQKDNEKRPPLAFVTQTLFGHGYRPKQEGKQDEVQQLAI 458 W+P + G + YRL WQ + LA T G G +P Q + +V++ + Sbjct: 399 MWVPKAAARAGDRYQLRYRLHWQSETPFPSALARCVATRLGRGGQPGQP-RPPQVRKFMV 457 Query: 459 DFDGGNLKKLPANARVEGVVEADANGKLASVTTRK--NEMTGGWRVEVKLRRLEENKPVE 516 +F G L+ LP + E V+ A + G ++ V T N + G WR + L E +PVE Sbjct: 458 EFKGPPLQALPFGVKPEAVISA-SRGSISYVYTEALPNGVPGHWRAQFDL-TAEGEEPVE 515 Query: 517 LRGFLRNANGGTTLSETWSYILPP 540 LR FLR+ G LSETW + P Sbjct: 516 LRLFLRHQ--GQALSETWLFQYHP 537 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,728,452 Number of extensions: 74367 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 152 Number of HSP's successfully gapped: 3 Length of query: 541 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 451 Effective length of database: 1,193,720 Effective search space: 538367720 Effective search space used: 538367720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)