BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0055.p
         (755 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312747|ref|YP_003776839.1| arginine/lysine/ornithine decar...  1550   0.0  

>gi|300312747|ref|YP_003776839.1| arginine/lysine/ornithine
           decarboxylase [Herbaspirillum seropedicae SmR1]
          Length = 750

 Score = 1550 bits (4013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 747/755 (98%), Positives = 748/755 (99%), Gaps = 5/755 (0%)

Query: 1   MKFRFPIVIIDEDFRSENTSGLGIRALADAIEAEGMEVLGVTSYGDLAQFAQQQSRASAF 60
           MKFRFPIVIIDEDFRSENTSGLGIRALADAIEAEGMEVLGVTSYGDLAQFAQQQSRASAF
Sbjct: 1   MKFRFPIVIIDEDFRSENTSGLGIRALADAIEAEGMEVLGVTSYGDLAQFAQQQSRASAF 60

Query: 61  ILSIDDEEMGAGSDEETDHALKALRAFVSEIRHKNADIPIYLYGETRTSRHIPNDVLREL 120
           ILSIDDEEMGAGSDEETDHALKALRAFVSEIRHKNADIPIYLYGETRTSRHIPNDVLREL
Sbjct: 61  ILSIDDEEMGAGSDEETDHALKALRAFVSEIRHKNADIPIYLYGETRTSRHIPNDVLREL 120

Query: 121 HGFIHMFEDTPEFVARHIIREAKSYLDGLAPPFFRALVDYAQDGSYSWHCPGHSGGVAFL 180
           HGFIHMFEDTPEFVARHIIREAKSYLDGLAPPFFRALVDYAQDGSYSWHCPGHSGGVAFL
Sbjct: 121 HGFIHMFEDTPEFVARHIIREAKSYLDGLAPPFFRALVDYAQDGSYSWHCPGHSGGVAFL 180

Query: 181 KSPVGQMFHQFFGERMLRADVCNAVEELGQLLDHTGPVANSERNAARIFNADHCYFVTNG 240
           KSPVGQMFHQFFGERMLRADVCNAVEELGQLLDHTGPVANSERNAARIFNADHCYFVTNG
Sbjct: 181 KSPVGQMFHQFFGERMLRADVCNAVEELGQLLDHTGPVANSERNAARIFNADHCYFVTNG 240

Query: 241 TSTSNKMVWHSTVAPGDIVVVDRNCHKSILHSIIMTGAIPVFLMPTRNHLGIIGPIPLEE 300
           TSTSNKMVWHSTVAPGDIVVVDRNCHKSILHSIIMTGAIPVFLMPTRNHLGIIGPIPLEE
Sbjct: 241 TSTSNKMVWHSTVAPGDIVVVDRNCHKSILHSIIMTGAIPVFLMPTRNHLGIIGPIPLEE 300

Query: 301 FTLESIQRKIEANPFAREAKNKKPRILTITQSTYDGVVYNVETLKDMLDGEIETLHFDEA 360
           FTLESIQ+KIEANPFAREAKNKKPRILTITQSTYDGVVYNVETLKDMLDGEIETLHFDEA
Sbjct: 301 FTLESIQKKIEANPFAREAKNKKPRILTITQSTYDGVVYNVETLKDMLDGEIETLHFDEA 360

Query: 361 WLPHATFHDFYKDMHAIGKDRPRAKKSLIFSTQSTHKLLAGLSQASQILVRESETVKLDE 420
           WLPHATFHDFYKDMHAIGKDRPRAKKSLIFSTQSTHKLLAGLSQASQILVRESETVKLDE
Sbjct: 361 WLPHATFHDFYKDMHAIGKDRPRAKKSLIFSTQSTHKLLAGLSQASQILVRESETVKLDE 420

Query: 421 DAFNEAFLMHTSTSPQYSIIASCDVAXFPFAAAMMEAPGGTALVEESILEALDFRRAMKK 480
           DAFNEAFLMHTSTSPQYSIIASCDV     AAAMMEAPGGTALVEESILEALDFRRAMKK
Sbjct: 421 DAFNEAFLMHTSTSPQYSIIASCDV-----AAAMMEAPGGTALVEESILEALDFRRAMKK 475

Query: 481 IDQEFGDEWWFQVWGPNSFAADGIGEREDWVIKAEDDWHGFGNLAPGFNMLDPIKATIVT 540
           IDQEFGDEWWFQVWGPNSFAADGIGEREDWVIKAEDDWHGFGNLAPGFNMLDPIKATIV 
Sbjct: 476 IDQEFGDEWWFQVWGPNSFAADGIGEREDWVIKAEDDWHGFGNLAPGFNMLDPIKATIVN 535

Query: 541 PGLALNGQFGENGIPASIVTKYLAEHGVIVEKCGLYSFFIMFTIGITKGRWNTLVTALQQ 600
           PGLALNGQFGE GIPASIVTKYLAEHGVIVEKCGLYSFFIMFTIGITKGRWNTLVTALQQ
Sbjct: 536 PGLALNGQFGETGIPASIVTKYLAEHGVIVEKCGLYSFFIMFTIGITKGRWNTLVTALQQ 595

Query: 601 FKDDYDKNQPIWRILPEFAQRNPRYERLGLRDLCQQIHETYRAYDVARLTTEMYLSDMQP 660
           FKDDYDKNQPIWRILPEFAQRNPRYERLGLRDLCQQIHETYRAYDVARLTTEMYLSDMQP
Sbjct: 596 FKDDYDKNQPIWRILPEFAQRNPRYERLGLRDLCQQIHETYRAYDVARLTTEMYLSDMQP 655

Query: 661 AMKPSDAFSKMAHREIERVPLDELEGRVTSILLTPYPPGIPLLIPGEIFNKTIVDYLKFA 720
           AMKPSDAFSKMAHREIERVPLDELEGRVTSILLTPYPPGIPLLIPGEIFNKTIVDYLKFA
Sbjct: 656 AMKPSDAFSKMAHREIERVPLDELEGRVTSILLTPYPPGIPLLIPGEIFNKTIVDYLKFA 715

Query: 721 RDFNEKFPGFETDVHGLVKREVNGRRDYFVDCVKQ 755
           RDFNEKFPGFETDVHGLVKREVNGRRDYFVDCVKQ
Sbjct: 716 RDFNEKFPGFETDVHGLVKREVNGRRDYFVDCVKQ 750


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,234,742
Number of extensions: 91139
Number of successful extensions: 246
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 1
Length of query: 755
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 663
Effective length of database: 1,184,250
Effective search space: 785157750
Effective search space used: 785157750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)