BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0051.p (223 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312750|ref|YP_003776842.1| LysR family transcription regul... 429 e-122 gi|300309393|ref|YP_003773485.1| LysR family transcription regul... 137 8e-34 gi|300312961|ref|YP_003777053.1| transcription regulator protein... 99 2e-22 gi|300313102|ref|YP_003777194.1| LysR family transcription regul... 93 1e-20 gi|300310436|ref|YP_003774528.1| LysR family transcription regul... 92 4e-20 >gi|300312750|ref|YP_003776842.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 429 bits (1104), Expect = e-122, Method: Compositional matrix adjust. Identities = 214/223 (95%), Positives = 216/223 (96%) Query: 1 VRRIAQGKMGRIAVGFTESASLHPFVHSVIRAFRADAPDVAMTVEESNTNELIEALRAKR 60 VRRIAQGKMGRIAVGFTESASLHPFVHSVIRAFRADAPDVAMTVEESNTNELIEALR KR Sbjct: 100 VRRIAQGKMGRIAVGFTESASLHPFVHSVIRAFRADAPDVAMTVEESNTNELIEALRGKR 159 Query: 61 LDLAFVRSPVGDSGGLTIETMLVEDMVAALPIDHPLAEQGKRKSIALHALAEESFIMTRR 120 LDLAFVRSPVGDSGGLTIETML EDMVAALPIDHPL + GKRKSIALHALAEESFIMTRR Sbjct: 160 LDLAFVRSPVGDSGGLTIETMLEEDMVAALPIDHPLVDGGKRKSIALHALAEESFIMTRR 219 Query: 121 PNGPGLYDTIIAACHAAGFSPQVIQEARKNLSTLSLVAAGVGVAVIPASMTRVNAEGVVY 180 PNGPGLYDTIIAACHAAGFSPQVIQEARKNLSTLSLVAAGVGV VIPASMTRVNAEGVVY Sbjct: 220 PNGPGLYDTIIAACHAAGFSPQVIQEARKNLSTLSLVAAGVGVTVIPASMTRVNAEGVVY 279 Query: 181 LKLTGAAELKAPLHLAYRTGSISSAARLMREEALKLSAGRKRR 223 LKLTGA +LKAPLHLAYRTGSIS AARLMREEALKLSAGRKRR Sbjct: 280 LKLTGAPDLKAPLHLAYRTGSISGAARLMREEALKLSAGRKRR 322 >gi|300309393|ref|YP_003773485.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 137 bits (345), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 121/207 (58%), Gaps = 7/207 (3%) Query: 7 GKMGRIAVGFTESASLHPFVHSVIRAFRADAPDVAMTVEESNTNELIEALRAKRLDLAFV 66 G+ G + +GFT SA HP V ++ FR + +++ E T +L+ + A +LD AFV Sbjct: 88 GETGLLRMGFTSSAVFHPLVSHALQQFRERHRKLEISLSEGITEQLLADIAASQLDAAFV 147 Query: 67 RSPVGDSGGLTIETMLVEDMVAALPIDHPLAEQGKRKSIALHALAEESFIMTRRPNGPGL 126 R S L + + E + ALP HPLA +RKS+ L LA E+FIM R G L Sbjct: 148 RIVTTPSAALGVVELPAEKLKVALPRSHPLA---RRKSLRLQDLASENFIMVPRGKGSAL 204 Query: 127 YDTIIAACHAAGFSPQVIQEARKNLSTLSLVAAGVGVAVIPASMTRVNAEGVVYLKLTGA 186 YD+I +AC AAGF PQVIQ A + S ++LVA+G+G++++P ++ +V V Y+++ Sbjct: 205 YDSIFSACQAAGFDPQVIQLAPQLTSAINLVASGLGISIVPEAIEQVQLAQVRYVEIVEP 264 Query: 187 AELKAPLHLAYRTGSISS---AARLMR 210 A +A L LAY SI++ AA L R Sbjct: 265 AP-RAQLSLAYHRQSIAASRFAAHLQR 290 >gi|300312961|ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 99.4 bits (246), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 108/202 (53%), Gaps = 6/202 (2%) Query: 2 RRIAQGKMGRIAVGFTESASLHPFVHSVIRAFRADAPDVAMTVEESNTNELIEALRAKRL 61 R IA+G+ +GF SA L+ + +I+ FR + P++ + E T E +EAL++ R+ Sbjct: 83 RVIARGRQHWFNIGFVPSA-LYGLLPEMIKRFRTEMPEIEIGFSEIVTMEQVEALKSGRI 141 Query: 62 DLAFVRSPVGDSGGLTIETMLVEDMVAALPIDHPLAEQGKRKSIALHALAEESFIMTRRP 121 D+ F R P+ D + ET++ E +VA P+ HPL + K + L LA + FI+ Sbjct: 142 DVGFGRLPISDP-DIVCETIVEEPLVAVFPLGHPLLARNK---VTLAQLAAQRFILYPAR 197 Query: 122 NGPGLYDTIIAACHAAGFSPQVIQEARKNLSTLSLVAAGVGVAVIPASMTRVNAEGVVYL 181 P D ++ + P +++EA + + + LVAAGVGV ++P S+ ++ VVY Sbjct: 198 PRPSYADQVLDIFSSRALRPSIVKEANEMQTAIGLVAAGVGVTLVPRSVQGLHRSDVVYR 257 Query: 182 KLTGAAELKAPLHLAYRTGSIS 203 L+ + +P+ + +R S Sbjct: 258 PLSNKG-VHSPVIMNFRANDRS 278 >gi|300313102|ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 93.2 bits (230), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 95/180 (52%), Gaps = 5/180 (2%) Query: 7 GKMGRIAVGFTESASLHPFVHSVIRAFRADAPDVAMTVEESNTNELIEALRAKRLDLAFV 66 GK G + VGF S + + + SV R + A P+V M + E N L + +++D+ + Sbjct: 89 GKSGALKVGFMMSTAYN-ILPSVTRHYSAAYPEVDMRLTEYVPNLLATDIEDEKIDVGIM 147 Query: 67 RSPVGDSGGLTIETMLVEDMVAALPIDHPLAEQGKRKSIALHALAEESFIMTRRPNGPGL 126 P D L T+ E ++A LP DH LA R+SI+ LAE++FI R P + Sbjct: 148 YRP-EDCRRLDSHTIYAEPLLAVLPRDHRLA---GRQSISAAELAEDAFISIPRMIAPVV 203 Query: 127 YDTIIAACHAAGFSPQVIQEARKNLSTLSLVAAGVGVAVIPASMTRVNAEGVVYLKLTGA 186 YD I C GF P+++ E + ++LV G+GVA++P SM ++ + V+ L GA Sbjct: 204 YDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGLGVALVPTSMQAMHLDTTVFKPLIGA 263 >gi|300310436|ref|YP_003774528.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 300 Score = 92.0 bits (227), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 113/216 (52%), Gaps = 14/216 (6%) Query: 1 VRRIAQGKMGRIAVGFTESASLHPFVHSVIRAFRADAPDVAMTVEESNTNELIEALRAKR 60 VRR A G G +++ F SA + + +++ FRA P V + + E+ T+ +E L + Sbjct: 88 VRRAASGASGLLSLSFISSAD-YSILPPLLQRFRAHYPQVQIELREATTDVQLEDLLQGK 146 Query: 61 LDLAFVRSPVGDSGG--LTIETMLVEDMVAALPIDHPLAEQG---KRKSIALHALAEESF 115 +D + P+ + L + +L E ++AALP +G KR ++L +L E Sbjct: 147 IDAGLLLPPLPEKAAALLEVRPVLSEPLIAALP-------EGAVRKRGPVSLKSLRELPL 199 Query: 116 IMTRRPNGPGLYDTIIAACHAAGFSPQVIQEARKNLSTLSLVAAGVGVAVIPASMTRVNA 175 I+ R P +DTI++ AG +P + QEA + + + LV+AG+G+A++P S++ + Sbjct: 200 IIFPRRIAPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGLVSAGMGMALVPQSVSNLKR 259 Query: 176 EGVVYLKLTGAAELKAPLHLAYRTGSISSAARLMRE 211 GV Y +L+ A LA+R S SS R + E Sbjct: 260 PGVDYRRLSDPAP-AIQTSLAWRRDSPSSVLRALLE 294 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.132 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 621,266 Number of extensions: 22953 Number of successful extensions: 134 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 10 Length of query: 223 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 141 Effective length of database: 1,231,600 Effective search space: 173655600 Effective search space used: 173655600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)