BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0049.p
         (273 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312752|ref|YP_003776844.1| enhanced serine sensitivity pro...   437   e-124

>gi|300312752|ref|YP_003776844.1| enhanced serine sensitivity
           protein [Herbaspirillum seropedicae SmR1]
          Length = 264

 Score =  437 bits (1125), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/264 (79%), Positives = 236/264 (89%), Gaps = 1/264 (0%)

Query: 11  MQAESSPAVTPLEEALRRAHEDPEARPAFYRMLLESTVFVRGNLPPDGNREQVQIMRWPG 70
           MQAE+SP+++PLEEAL RA  DPEARPAFYRMLL+STVFVRGN PPDGNREQVQIMRWPG
Sbjct: 1   MQAETSPSLSPLEEALLRARGDPEARPAFYRMLLDSTVFVRGNPPPDGNREQVQIMRWPG 60

Query: 71  EDGEMMLPMFSSMEEIGQAFEEGASCLGMTVRELFRMCGDGRTIFILYPDSPLPKYFVPG 130
           +DG MMLPMFSS+ EI QAF++ ASC+GMTVRELFRMCGDGRTIFILYPDSP  KYFVPG
Sbjct: 61  DDGAMMLPMFSSLLEIEQAFDKDASCVGMTVRELFRMCGDGRTIFILYPDSPHAKYFVPG 120

Query: 131 EVAHVLQQDNGGVPPSRDM-GGANVQLGVPDQPPQAMLDALSAFFTRHDKVKAAYLALMH 189
           EVAHVLQ+DNGGVP +R++ GG +VQLG P QPPQAML+ALS  F RHDKVKAAYL++MH
Sbjct: 121 EVAHVLQEDNGGVPVAREVGGGGSVQLGSPAQPPQAMLEALSTLFARHDKVKAAYLSMMH 180

Query: 190 NPGHDPQPTLVIGVDLPASHMERLMREITPVIAEHGPANAPVDMLRVEAGNSIADFMLTE 249
           +P HDPQP LV+G+DLPASHMER+MRE+ PVIA+H PAN  VDMLRVE GN IAD+ML E
Sbjct: 181 DPAHDPQPALVVGIDLPASHMERVMREVGPVIAQHAPANTAVDMLRVEPGNGIADYMLAE 240

Query: 250 TKPFYERRQPERVGFFKSLFGGGR 273
           TKPFYER+Q ERVGFFKSLFGGGR
Sbjct: 241 TKPFYERQQRERVGFFKSLFGGGR 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 992,301
Number of extensions: 44927
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,222,130
Effective search space: 230982570
Effective search space used: 230982570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)