BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0048.p (451 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 414 e-117 gi|300312753|ref|YP_003776845.1| hypothetical protein Hsero_3457... 265 5e-72 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 216 3e-57 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 214 9e-57 gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 201 9e-53 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 414 bits (1064), Expect = e-117, Method: Compositional matrix adjust. Identities = 198/246 (80%), Positives = 221/246 (89%) Query: 194 RLPKLTGAIGFDQVSFRYRPEASDVIRSLTLNIRAGEVIGIVGRSGSGKSTLTKLVQRLY 253 RLP++ GAI FD VSFRYRPE +VIR L+L IR GEVIGIVGRSGSGKSTL KLVQRLY Sbjct: 469 RLPRVNGAISFDLVSFRYRPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLY 528 Query: 254 VCDRGRVLIDGQDLAIIDTASLRQQIGVVLQENMLFSRSIRDNIALTDPSLPIEAVMAAA 313 +C+ GR+ +DGQD+AIIDTASLRQQIGVVLQEN LFSRSIRDNIAL DPS PIE ++ AA Sbjct: 529 ICETGRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAA 588 Query: 314 RLAGAHEFICELPEAYDTLVGEHGTGLSGGQRQRIAIARALISNPAILIFDEATSALDYE 373 +LAGAH+FICELPE YDT+VGE G+GLSGGQRQRIAIARALI+NP ILIFDEATSALDYE Sbjct: 589 KLAGAHDFICELPEGYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDYE 648 Query: 374 SEKIIQDNMRQICAGRTVLIIAHRLSAVRDAHRILVMDKGQIVESGRHEELLRNPGGIYT 433 SEKIIQDNMRQICAGRTVLIIAHRLSAVRDA RI+VM++G++ ESG H+EL+ PGGIY Sbjct: 649 SEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELIDLPGGIYA 708 Query: 434 HLHRLQ 439 HLHRLQ Sbjct: 709 HLHRLQ 714 >gi|300312753|ref|YP_003776845.1| hypothetical protein Hsero_3457 [Herbaspirillum seropedicae SmR1] Length = 496 Score = 265 bits (677), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 142/199 (71%), Positives = 157/199 (78%) Query: 1 MFFLIARLLKAWTRPIPGPTGEGSRDHLAHADGGEPADWGPRVYLPGHGDISLRRALPRV 60 M IAR LK WTRPIP GEGSRD L DG ADWGP VYLPGHG +SLR+ALP+V Sbjct: 14 MLASIARWLKQWTRPIPPAAGEGSRDQLPPPDGRALADWGPTVYLPGHGQMSLRKALPKV 73 Query: 61 AAMEKPELVCECITQHSGYLRQAGIERAMVLNDTRYLPLLAARLNDWSAPVRQAAQQALA 120 A ME+P LV ECI SGYLRQAGIERA+ L+DTRYLPL+A RLNDWSA VRQAA+QAL Sbjct: 74 ATMEQPALVSECIIHSSGYLRQAGIERAVRLSDTRYLPLIAMRLNDWSAAVRQAARQALE 133 Query: 121 HYRSTHPAADFVPALAALHGAARGQRSDHAWIAAFVQGLDADDTADWLKPALASRDAPLR 180 YR TH AADFVPAL ALHGAARGQR+DHAWIAAF+QGL A+D DWL PAL +RD LR Sbjct: 134 QYRETHAAADFVPALTALHGAARGQRADHAWIAAFMQGLAAEDGPDWLLPALRARDPQLR 193 Query: 181 RAAYALAMDYLPQRLPKLT 199 RAAY LA+D+LPQR +L Sbjct: 194 RAAYGLALDHLPQRRAELV 212 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 216 bits (550), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 116/240 (48%), Positives = 157/240 (65%), Gaps = 3/240 (1%) Query: 197 KLTGA-IGFDQVSFRYRPEASDVIRSLTLNIRAGEVIGIVGRSGSGKSTLTKLVQRLYVC 255 K GA + FD V F Y ++ + ++AG +VG SGSGKSTL++L+ R Y Sbjct: 356 KTQGANLHFDHVDFSYE-RNRQILFDVDFTVQAGTTTAVVGHSGSGKSTLSRLLYRFYDV 414 Query: 256 DRGRVLIDGQDLAIIDTASLRQQIGVVLQENMLFSRSIRDNIALTDPSLPIEAVMAAARL 315 D G + IDGQDL + ASLRQ IG+V Q+ +LF+ +I NIA P E ++AAA+ Sbjct: 415 DAGAIRIDGQDLRTVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKPGATREQIVAAAKA 474 Query: 316 AGAHEFICELPEAYDTLVGEHGTGLSGGQRQRIAIARALISNPAILIFDEATSALDYESE 375 A H+FI LP+ Y ++VGE G LSGG++QR+AIAR L+ +PAILIFDEATSALD +E Sbjct: 475 AYIHDFIESLPDGYASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAE 534 Query: 376 KIIQDNMRQICAGRTVLIIAHRLSAVRDAHRILVMDKGQIVESGRHEELLRNPGGIYTHL 435 + IQ + +I RT L+IAHRLS + +A +ILV+D G+IVE G H LL GG+Y + Sbjct: 535 QAIQQQLEEIARERTTLVIAHRLSTIVNAQQILVLDHGRIVERGTHAGLLM-AGGLYAQM 593 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 214 bits (546), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 124/251 (49%), Positives = 166/251 (66%), Gaps = 6/251 (2%) Query: 192 PQRLPKLTGAIGFDQVSFRYRPEASDVIRSLTLNIRAGEVIGIVGRSGSGKSTLTKLVQR 251 P L K+ GAI + FRY A VIR+++L+I GE+IG+VG SGSGKST+ L+ R Sbjct: 495 PVHLEKVQGAIEVRNIGFRYGNRA--VIRNMSLSIAPGEMIGLVGHSGSGKSTMVNLICR 552 Query: 252 LYVCDRGRVLIDGQDLAIIDTASLRQQIGVVLQENMLFSRSIRDNIALTDPSLPIEAVMA 311 Y G + IDG D+ + + R+ IG+VLQE LF +I +NIA P E ++A Sbjct: 553 FYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEATREEIIA 612 Query: 312 AARLAGAHEFICELPEAYDTLVGEHGTGLSGGQRQRIAIARALISNPAILIFDEATSALD 371 AAR A AHEFI LP+ YD+LVGE G LSGG+RQRI+IARAL+ +P ILI DEATS++D Sbjct: 613 AARAAHAHEFILRLPQGYDSLVGERGQALSGGERQRISIARALLIDPRILILDEATSSVD 672 Query: 372 YESEKIIQDNMRQICAGRTVLIIAHRLSAVRDAHRILVMDKGQIVESGRHEELLRNPGGI 431 +EK IQ + + GRT + IAHRLS +R A R++V+D+GQ+VE G HEEL+ G Sbjct: 673 TTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVEVGNHEELMAREG-- 730 Query: 432 YTHLHRLQMSQ 442 H ++L +Q Sbjct: 731 --HYYKLYQAQ 739 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 201 bits (511), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 119/249 (47%), Positives = 154/249 (61%), Gaps = 7/249 (2%) Query: 193 QRLPKLTGAIGFDQVSFRYRPEA-SDVIRSLTLNIRAGEVIGIVGRSGSGKSTLTKLVQR 251 Q L G + F+ VSF Y A V+ L L IR GE IG+VGRSG+GKST+ L+ R Sbjct: 351 QPLKVSQGELRFEGVSFSYGGAAPRPVVDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLR 410 Query: 252 LYVCDRGRVLIDGQDLAIIDTASLRQQIGVVLQENMLFSRSIRDNIALTDPSLPIEAVMA 311 Y + GR+ IDGQD+A + SLR QIG+V Q+ L RS+R+NI P + Sbjct: 411 FYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENITYGRPDASDAEMTH 470 Query: 312 AARLAGAHEFICELPEA-----YDTLVGEHGTGLSGGQRQRIAIARALISNPAILIFDEA 366 AA A AH+FI L +A YD VGE G LSGGQRQRIAIAR ++ + IL+ DEA Sbjct: 471 AAERAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEA 530 Query: 367 TSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDAHRILVMDKGQIVESGRHEELLR 426 TSALD E E IQ ++ ++ G+TV+ IAHRLS + R++V+D+G+IVE G H ELL Sbjct: 531 TSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGSHAELL- 589 Query: 427 NPGGIYTHL 435 G+Y L Sbjct: 590 AANGLYARL 598 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,551,460 Number of extensions: 71494 Number of successful extensions: 606 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 455 Number of HSP's successfully gapped: 135 Length of query: 451 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 363 Effective length of database: 1,203,190 Effective search space: 436757970 Effective search space used: 436757970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)