BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0046.p
         (482 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312187|ref|YP_003776279.1| outer membrane channel lipoprot...   427   e-120

>gi|300312187|ref|YP_003776279.1| outer membrane channel lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 484

 Score =  427 bits (1097), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/448 (52%), Positives = 316/448 (70%), Gaps = 11/448 (2%)

Query: 30  DPLLARPPELDHGKVLPGDALTLPCDDRPAVPPVPLSLRDAIDLGLCHHAQVKAGWARIK 89
           DPLLARPP+L  G++LPGD   + C   P V    LSL DAID  LC   Q++A WA IK
Sbjct: 37  DPLLARPPDLITGRLLPGDDQRVECAASPYVAGKALSLADAIDQALCQQPQIQAAWAAIK 96

Query: 90  VQAAQKGEARAAYLPTINAGLRHQQERVRQPDAVFTPDAQRVSRSQYYTLTWRLLDFGGR 149
           +QAAQ GEARA YLPT+ +G      ++           +R   + Y TLTWRLLDFGGR
Sbjct: 97  LQAAQLGEARAGYLPTVTSGA----SKLNSATQYEGGSGRRSLTTLYATLTWRLLDFGGR 152

Query: 150 AANLRAADALLEAALASHDAILQKTMSNVIAAYYEVQTSGANRQARELNEGLARQIMETT 209
           +AN RAADA+L++ALASHDA +QK +++V+A+YYEVQ+S A++QARE ++ LARQ++ET 
Sbjct: 153 SANQRAADAMLQSALASHDAAVQKALASVVASYYEVQSSSASQQAREKSQQLARQLLETA 212

Query: 210 QRRAARGMAARSDLLQVQTALSKAELEHARAIGQHEKSLITLSIALGLRGRSAQIDVPIG 269
            RR  RG+ +  + LQ +T L+KAELE ARA GQH+K+   L+ A+GL  R AQ DVP+ 
Sbjct: 213 IRREQRGVGSLPETLQARTFLAKAELEQARASGQHKKAQAMLAAAMGLL-REAQ-DVPVL 270

Query: 270 S--PDSAMDEQQVSQDLAQWSAQAQLHHPALLASRAQLASAREKLAATRAEGLPNVDFSH 327
           +  P+       + Q+L  W   A+ +HPA+LA+RAQL +AREKL   R+EG+P +D S 
Sbjct: 271 TLVPEQEEYPDGLEQNLPAWLQAARQYHPAILAARAQLEAAREKLQVARSEGMPTLDLSA 330

Query: 328 GYYVNGRPNQ-GNVGRQTRETVTGLSLNIPIFDGFSHTYKVRSAQAQIDLREAELLEAEG 386
             Y NGRPNQ GN G   RE + GL+L +PIF+GF+  YKV  AQAQI+ REAEL E + 
Sbjct: 331 RQYANGRPNQAGNRG--DRERMVGLNLTVPIFEGFARDYKVGGAQAQIEAREAELQEVQT 388

Query: 387 QVIGELASAYADNQAAQRNLASSQRLLDSAKLALKDVQRKYERGLSDIIGILNVQAALAD 446
           QV+G++AS YA+   A  +L+SS+RLLD+A+ A+  V+RKY+ G +DI+ +LN Q AL++
Sbjct: 389 QVLGDIASTYAEAMTALNSLSSSRRLLDAAQGAVDSVRRKYDAGAADIVEMLNAQTALSE 448

Query: 447 ASQERIRALAEWRSARLRLLASAGELGR 474
           A QER++A+++WRSARLRLLA+AG +GR
Sbjct: 449 ADQERVKAMSDWRSARLRLLANAGRMGR 476


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,291,190
Number of extensions: 47976
Number of successful extensions: 254
Number of sequences better than 1.0e-08: 8
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 8
Length of query: 482
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 393
Effective length of database: 1,198,455
Effective search space: 470992815
Effective search space used: 470992815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)