BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0045.p
         (371 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312754|ref|YP_003776846.1| ATP-dependent RNA helicase [Her...   607   e-175
gi|300310601|ref|YP_003774693.1| citrate synthase [Herbaspirillu...    65   1e-11

>gi|300312754|ref|YP_003776846.1| ATP-dependent RNA helicase
            [Herbaspirillum seropedicae SmR1]
          Length = 1355

 Score =  607 bits (1566), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 325/344 (94%), Positives = 330/344 (95%), Gaps = 2/344 (0%)

Query: 30   LHAHPGGQARQQFQKLAEQVAIAPREDEDSAAPAPAAVSGKPVPSAALAAPA--SVGEYS 87
            L A  GGQARQQFQKLAEQVAIAPREDED+AAP+PAA + K   SAA AA A  SVGEYS
Sbjct: 1012 LQAEFGGQARQQFQKLAEQVAIAPREDEDNAAPSPAAATSKGGTSAAPAAAAPASVGEYS 1071

Query: 88   NLTSWSFGELPELLEITRGSGKQAQTLIGFPALVDRKTHCDLEVFDDPAEAARFHYAGLR 147
            NLTSWSFGELPELLEITRGSGKQAQTLIGFPALVDRKTHCDLEVFDDPAEAARFHYAGLR
Sbjct: 1072 NLTSWSFGELPELLEITRGSGKQAQTLIGFPALVDRKTHCDLEVFDDPAEAARFHYAGLR 1131

Query: 148  RLFALQMKEQLKYLEKNIPGLQQMGMQFMALGSQEELREQILNAGLERAFLQDPLPRNAD 207
            RLFALQMKEQLKYLEKNIPGLQQMGMQFMALGSQEELREQILNAGLERAFLQDPLPRNAD
Sbjct: 1132 RLFALQMKEQLKYLEKNIPGLQQMGMQFMALGSQEELREQILNAGLERAFLQDPLPRNAD 1191

Query: 208  EFNRRRDEGKARLGLLVNEIARLCGQVLAEYHALPKKLQGIKAHAAAAADMQAQLAQLVG 267
            EFNRRRDEGKARLGLLVNEIARLCGQ+LAEYHALPKKLQGIKAHA AAADMQAQL+QLVG
Sbjct: 1192 EFNRRRDEGKARLGLLVNEIARLCGQILAEYHALPKKLQGIKAHAQAAADMQAQLSQLVG 1251

Query: 268  KRFVAETDYGNLSHYPRYLKAINVRLDKLRADPARDTRLLAEWNSVALPYQRALKDRAGR 327
            KRFVAETDYGNLSHYPRYLKAINVRLDKLRADPARDTRLLAEWNSVALPYQRALKDRAGR
Sbjct: 1252 KRFVAETDYGNLSHYPRYLKAINVRLDKLRADPARDTRLLAEWNSVALPYQRALKDRAGR 1311

Query: 328  VDPKMTEFRWMLEELRVSLYAQELKTPMPVSVKRLQKVWESMQR 371
             DPKMTEFRWMLEELRVSLYAQELKTPMPVSVKRLQKVWESMQR
Sbjct: 1312 ADPKMTEFRWMLEELRVSLYAQELKTPMPVSVKRLQKVWESMQR 1355


>gi|300310601|ref|YP_003774693.1| citrate synthase [Herbaspirillum
          seropedicae SmR1]
          Length = 431

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 39/52 (75%), Gaps = 2/52 (3%)

Query: 1  MSRYLSSSEAATLLGVSRQTLYAYVSRGLLHAHPGGQARQQ--FQKLAEQVA 50
          MS YL+S+EAA  LGVSRQTLYAYVSRGLLHA PG  AR+   F    E+VA
Sbjct: 1  MSNYLNSTEAAARLGVSRQTLYAYVSRGLLHAEPGATARESRYFAADVERVA 52


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,041,139
Number of extensions: 39528
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,207,925
Effective search space: 343050700
Effective search space used: 343050700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)