BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0044.p
         (974 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312754|ref|YP_003776846.1| ATP-dependent RNA helicase [Her...  1977   0.0  

>gi|300312754|ref|YP_003776846.1| ATP-dependent RNA helicase
            [Herbaspirillum seropedicae SmR1]
          Length = 1355

 Score = 1977 bits (5122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 959/970 (98%), Positives = 966/970 (99%)

Query: 1    VRNPLPPVTFPEELPVSGRRHEIAEALRAHQVIIVSGETGSGKTTQLPKICLELGRGEKG 60
            +RNPLPPVTFPEELPVSGRRHEIA ALRAHQVIIVSGETGSGKTTQLPKICLELGRGEKG
Sbjct: 49   LRNPLPPVTFPEELPVSGRRHEIAAALRAHQVIIVSGETGSGKTTQLPKICLELGRGEKG 108

Query: 61   LIGHTQPRRIAASSTAKRIAQELNSPPGELVGYKVRFNDTLSKGAWIKLMTDGILLAETQ 120
            LIGHTQPRRIAASSTAKRIAQELNSPPGELVGYKVRFNDTLSKGAWIKLMTDGILLAETQ
Sbjct: 109  LIGHTQPRRIAASSTAKRIAQELNSPPGELVGYKVRFNDTLSKGAWIKLMTDGILLAETQ 168

Query: 121  TDPLLRQYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIDADRFARHFGR 180
            TDPLLRQYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIDADRFARHFGR
Sbjct: 169  TDPLLRQYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIDADRFARHFGR 228

Query: 181  EVKGELVPAPVIEVSGRLYPVEIRYRPIDNADRSGVSTEVAQARARAEGRASQAQKDREQ 240
            EVKGE+VPAPVIEVSGRLYPVEIRYRPIDNADRSGVSTEVAQARARAEGRASQAQKDREQ
Sbjct: 229  EVKGEIVPAPVIEVSGRLYPVEIRYRPIDNADRSGVSTEVAQARARAEGRASQAQKDREQ 288

Query: 241  RDLMDAVVDAVDELARIGSGDVLVFLPGEREIRDAAEALRKHHPPHVEILPLFARLSAQE 300
            RDLMDAVVDAVDELARIG+GDVLVFLPGEREIRDAAEALRKHHPPHVEILPLFARLSAQE
Sbjct: 289  RDLMDAVVDAVDELARIGAGDVLVFLPGEREIRDAAEALRKHHPPHVEILPLFARLSAQE 348

Query: 301  QERVFKTSNARRIVLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQIEPVAQS 360
            QERVFKTSNARRIVLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQIEPVAQS
Sbjct: 349  QERVFKTSNARRIVLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQIEPVAQS 408

Query: 361  AANQRAGRCGRVAAGVCIRLYDEQDFLQRPKFTDPEILRSSLASVILRMKSLHLTDVESF 420
            AANQRAGRCGRVAAGVCIRLYDEQDFLQRPKFTDPEILRSSLASVILRMKSLHLTDVESF
Sbjct: 409  AANQRAGRCGRVAAGVCIRLYDEQDFLQRPKFTDPEILRSSLASVILRMKSLHLTDVESF 468

Query: 421  PFIEPPLGRAIADGYQLLQELGAVEEQGGVNRLTALGKQLARLPLDPRVGRMILAGRDNA 480
            PFIEPPLGRAIADGYQLLQELGAVEEQGGVNRLT LGKQLARLPLDPRVGRMILAGRDNA
Sbjct: 469  PFIEPPLGRAIADGYQLLQELGAVEEQGGVNRLTPLGKQLARLPLDPRVGRMILAGRDNA 528

Query: 481  CLTELLIIAAAVSVQDPRDRPMDAQNAADNAHKKFADEKSEFASYLKIWKWFEEAIAHKK 540
            CLTELLIIAAAVSVQDPRDRPMDAQNAADNAHKKFADEKSEFASYLKIWKWFE+AIAHKK
Sbjct: 529  CLTELLIIAAAVSVQDPRDRPMDAQNAADNAHKKFADEKSEFASYLKIWKWFEDAIAHKK 588

Query: 541  SNRQLQEHCRENFLSQLRLREWRDVHSQLLTIVKEQGWRLNEAPATYDQLHLALLTGLLG 600
            SNRQLQEHCRENFLSQLRLREWRDVHSQLLTIVKEQGWRLNEAPATYDQLHLALLTGLLG
Sbjct: 589  SNRQLQEHCRENFLSQLRLREWRDVHSQLLTIVKEQGWRLNEAPATYDQLHLALLTGLLG 648

Query: 601  NVGFKSEDDAQYLGARGIKFNIWPGAHLTKKPGRWVMAAELVDTARLYARCVANIQPEWL 660
            NVGFKSEDDAQYLGARGIKFNIWPGAHLTKKPGRWVMAAELVDTARLYARCVANIQPEWL
Sbjct: 649  NVGFKSEDDAQYLGARGIKFNIWPGAHLTKKPGRWVMAAELVDTARLYARCVANIQPEWL 708

Query: 661  EKLGGHLLKKSWGEPRWEKRAAQVTASERATLYGLVVYSQRRINYGKINPTEAREIFIRD 720
            EKLGGHLLKKSWGEPRWEKRAAQVTASERATLYGLVVYSQRRINYGKINP EAREIFIRD
Sbjct: 709  EKLGGHLLKKSWGEPRWEKRAAQVTASERATLYGLVVYSQRRINYGKINPAEAREIFIRD 768

Query: 721  ALVGGDFETRAPFFAHNQKLVREIENLEHKSRRLDVLVDDELIIGFYDKLIPHDICNGVD 780
            ALVGGDFETRAPFFAHNQKLVREIENLEHKSRRLDVLVDDELIIGFYDKLIPHDICNGVD
Sbjct: 769  ALVGGDFETRAPFFAHNQKLVREIENLEHKSRRLDVLVDDELIIGFYDKLIPHDICNGVD 828

Query: 781  FEKWHKEATAADPKLLYLNRDDLMRHEAAGVTTELFPKTMNVAGIAMALSYHFEPGAARD 840
            FEKWHKEATAADPKLLYLNRDDLMRHEAAGVTTELFPKTMNVAGIAMALSYHFEPGAARD
Sbjct: 829  FEKWHKEATAADPKLLYLNRDDLMRHEAAGVTTELFPKTMNVAGIAMALSYHFEPGAARD 888

Query: 841  GVTLTVPLYALNQVSSDRCDWLVPGMLKEKVHLLLKSLPQKLRRHCVPLPDYAARFCERM 900
            GVTLTVPLYALNQVS+DRC+WLVPGMLKEKVHLLLKSLPQKLRRHCVPLPDYAARFCERM
Sbjct: 889  GVTLTVPLYALNQVSADRCEWLVPGMLKEKVHLLLKSLPQKLRRHCVPLPDYAARFCERM 948

Query: 901  EERKTFGRGNLIDAIIADIREQITILVKPSDFKQETLSAHHAMNFKIVDEHGRQLEMGRN 960
            EERK FGRGNLIDAIIADIREQIT+LVKPSDFKQETLSAHHAMNFKIVDEHGRQLEMGRN
Sbjct: 949  EERKAFGRGNLIDAIIADIREQITLLVKPSDFKQETLSAHHAMNFKIVDEHGRQLEMGRN 1008

Query: 961  LAALQAEFGG 970
            LAALQAEFGG
Sbjct: 1009 LAALQAEFGG 1018


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 3,030,432
Number of extensions: 126990
Number of successful extensions: 465
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 1
Length of query: 974
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 880
Effective length of database: 1,174,780
Effective search space: 1033806400
Effective search space used: 1033806400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 135 (56.6 bits)