BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0043.p
         (437 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312755|ref|YP_003776847.1| N-acetylglutamate synthase [Her...   869   0.0  
gi|300313586|ref|YP_003777678.1| acetylglutamate kinase [Herbasp...   112   6e-26

>gi|300312755|ref|YP_003776847.1| N-acetylglutamate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score =  869 bits (2246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/437 (97%), Positives = 429/437 (98%)

Query: 1   MEKQTEFVNWLRSVAPYVHAFRGKTFVVAFPGELVMAGGLQVLAQDLSLLHALGIRVVVV 60
           MEKQTEFVNWLRSVAPYVHAFRGKTFVVAFPGELV AG LQVLAQDLSLLHALGIRVVVV
Sbjct: 15  MEKQTEFVNWLRSVAPYVHAFRGKTFVVAFPGELVTAGDLQVLAQDLSLLHALGIRVVVV 74

Query: 61  HGSRPQVAEQLALRNVEARFQNGLRVTDSAALECAKEAAGELRLDIEAAFSQGLPNTPMA 120
           HGSRPQVAEQLALRNVEARF NGLRV DSAALECAKEAAGELRLDIEAAFSQGLPNTPMA
Sbjct: 75  HGSRPQVAEQLALRNVEARFHNGLRVADSAALECAKEAAGELRLDIEAAFSQGLPNTPMA 134

Query: 121 HSAIRVISGNFVTARPMGVIDGVDLQLTGVVRKIAADVIQPIMNAGGIVLLSPLGFSPTG 180
           HSAIRVISGNFVTARPMGVIDGVDLQLTGVVRKIAADVIQPIMNAGGIVLLSPLGFSPTG
Sbjct: 135 HSAIRVISGNFVTARPMGVIDGVDLQLTGVVRKIAADVIQPIMNAGGIVLLSPLGFSPTG 194

Query: 181 EAFNLTMEDVAVSAAISLRAEKLIFLSETPLMKDAGGAEFRELSSHQAEAVLSAGFLPSD 240
           EAFNLTMEDVAVSAAI+LRAEKLIFLSETP+M DAGGAE RELSSHQAEAVLSAGFL  +
Sbjct: 195 EAFNLTMEDVAVSAAIALRAEKLIFLSETPMMTDAGGAEIRELSSHQAEAVLSAGFLSPE 254

Query: 241 AAFYLASVVKACNAGVSRAHIVPFSTDGSALLELFTHDGVGTMVTYENLESLRQATIEDV 300
           AAFYLASVVKACNAGVSRAHIVPF+TDGSALLELFTHDGVGTMVTYENLESLRQATIEDV
Sbjct: 255 AAFYLASVVKACNAGVSRAHIVPFATDGSALLELFTHDGVGTMVTYENLESLRQATIEDV 314

Query: 301 GGILKLIEPLEADGTLVKRGRELIEREIHYFSVIEHDNVIFGCAALYPFPKERMGEMACL 360
           GGILKLIEPLEADGTLVKRGRELIEREIHYFSVIEHDNVIFGCAALYPFPKERMGEMACL
Sbjct: 315 GGILKLIEPLEADGTLVKRGRELIEREIHYFSVIEHDNVIFGCAALYPFPKERMGEMACL 374

Query: 361 TVNPEVQGQGDGDRILKHIETRAREAGLTKLFVLTTRTSHWFLKRGFVLAGVNDLPQDRQ 420
           TVNPEVQGQGDGDRILKHIETRAREAGLTKLFVLTTRTSHWFLKRGFVLAGVNDLPQDRQ
Sbjct: 375 TVNPEVQGQGDGDRILKHIETRAREAGLTKLFVLTTRTSHWFLKRGFVLAGVNDLPQDRQ 434

Query: 421 QIYNWQRKSQVLIKNLY 437
           QIYNWQRKSQVLIKNLY
Sbjct: 435 QIYNWQRKSQVLIKNLY 451


>gi|300313586|ref|YP_003777678.1| acetylglutamate kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  112 bits (280), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 137/289 (47%), Gaps = 26/289 (8%)

Query: 11  LRSVAPYVHAFRGKTFVVAFPGELVMAGGLQ-VLAQDLSLLHALGIRVVVVHGSRPQVAE 69
           L    PY+  F GKT VV + G  +    L+   A+D+ LL  +G+  VVVHG  PQ+  
Sbjct: 17  LAEALPYIRKFHGKTIVVKYGGNAMTEESLKHGFARDVILLKLVGMNPVVVHGGGPQIDA 76

Query: 70  QLALRNVEARFQNGLRVTDSAALECAKEA-AGELRLDIEAAFSQGLPNTPMAHSAIRVI- 127
            L     +  F  G+R+TD   +E  +    GE++ DI    +           A+ +  
Sbjct: 77  ALKKIGKQGTFVQGMRITDEETMEVVEWVLGGEVQQDIVMLINH------YGGQAVGLTG 130

Query: 128 -SGNFVTARPMGVIDG------VDLQLTGVVRKIAADVIQPIMNAGGIVLLSPLGFSPTG 180
             G  + AR M + D       +D+   G +  I   V++ + +   I ++SP+GF   G
Sbjct: 131 KDGGLIRARKMQMPDKEHPGAFLDIGYVGEIEAINPAVVKALQDDAFIPIISPIGFGDDG 190

Query: 181 EAFNLTMEDVAVSAAISLRAEKLIFLSETPLMKDAGGAEFRELSSHQ-----AEAVLSAG 235
           +A+N+  + VA   A  L AEKLI ++    ++D  G    +LS+ +     A+  +S G
Sbjct: 191 QAYNINADVVAGKIAEILHAEKLIMMTNIAGVQDKAGNLLTDLSAREIDEMFADGTISGG 250

Query: 236 FLPSDAAFYLASVVKACNAGVSRAHIVPFSTDGSALLELFTHDGVGTMV 284
            LP      ++S + A  +GV+  HI+    + S LLE+ T    GTM+
Sbjct: 251 MLPK-----ISSALDAAKSGVNTVHIIDGRIEHSLLLEVLTEQAFGTMI 294


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,341,872
Number of extensions: 55613
Number of successful extensions: 164
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 2
Length of query: 437
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 349
Effective length of database: 1,203,190
Effective search space: 419913310
Effective search space used: 419913310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)