BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0041.p
         (300 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312757|ref|YP_003776849.1| Zn-dependent peptidase [Herbasp...   459   e-130
gi|300313431|ref|YP_003777523.1| zinc protease [Herbaspirillum s...   112   3e-26

>gi|300312757|ref|YP_003776849.1| Zn-dependent peptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 929

 Score =  459 bits (1180), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/269 (84%), Positives = 243/269 (90%), Gaps = 9/269 (3%)

Query: 1   LSLRHLRLAVLAVSLGFTFVS--------PWAHAATASAAPTLPAGVTQGPSAEGISEYR 52
           LSLR  RLA+L +SLGF F+S          A AA  +A  +LPAGV+ GPSAEGISEYR
Sbjct: 6   LSLRCPRLALLVLSLGF-FLSVPAAQAATATADAAPPAAIKSLPAGVSAGPSAEGISEYR 64

Query: 53  FANGFKLLLLPDDSKPTVTVNITYLVGSRHENYGETGMAHLLEHLMFKGSPHNPAIPQEF 112
           FANGFKLLLLPDDS+PTVTVNITYLVGSRHENYGETGMAHLLEHLMFKGSP +P+IPQ+F
Sbjct: 65  FANGFKLLLLPDDSQPTVTVNITYLVGSRHENYGETGMAHLLEHLMFKGSPRHPSIPQDF 124

Query: 113 SKRGMNFNGTTWLDRTNYYETFEAGKDNLQWAIAMEADRMVNSRIARKDLDSEMTVVRNE 172
           SKRGMNFNGTTWLDRTNYYETF+A  DNL+WAIAMEADRM+NS+IARKDLDSEMTVVRNE
Sbjct: 125 SKRGMNFNGTTWLDRTNYYETFQASPDNLRWAIAMEADRMLNSKIARKDLDSEMTVVRNE 184

Query: 173 FESGETSPSRVMLKRMQSVAYDWHSYGRNTIGARSDIENVRIENLQAFYRTYYQPDNAVL 232
           FE+GETSP+RVMLKRMQSVAYDWH+YGRNTIGARSDIENVRIENLQAFYRTYYQPDNAVL
Sbjct: 185 FEAGETSPTRVMLKRMQSVAYDWHAYGRNTIGARSDIENVRIENLQAFYRTYYQPDNAVL 244

Query: 233 LIAGKFDPAQVLQWVSQSFGRLPKPKRKL 261
           LIAGKFD AQVLQWV QSFGRLPKPKR L
Sbjct: 245 LIAGKFDAAQVLQWVDQSFGRLPKPKRTL 273



 Score = 58.9 bits (141), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 19/205 (9%)

Query: 56  GFKLLLLPDDSK-PTVTVNITYLVGSRHENYGETGMAHLLEHLMFKGSPH--NPAIPQEF 112
              L LLP  S+  TV+V++    G     +G+  +A L E ++ +G+       +  EF
Sbjct: 523 ALDLALLPKQSRGQTVSVSLHLRFGDAQSLFGQRNVAQLTEAMLMRGTDKLDRRQLADEF 582

Query: 113 SKRGMNFNGTTWLDRTNYYETFEAGKDNLQWAIAMEADRMVNSRIARKDLDSEMTVVRNE 172
           ++  +  NG+ +         F+  ++NL  AIA+  +   + R+   + +         
Sbjct: 583 AR--LKINGSLY--------RFQTTRENLVPAIALVGEVFRHPRMDAAEFEQLKNETVAG 632

Query: 173 FESGETSPSRVMLKRMQSVAYDWHSYGR----NTIGAR-SDIENVRIENLQAFYRTYYQP 227
            E+G   P     + + SV +D +  G      T+  R + +  V +E ++ F+R +Y  
Sbjct: 633 LEAGRKDPDTRAGEAL-SVHFDHYPAGDWRAAQTLEQRIAAVRAVTLEQVKDFHRRFYGA 691

Query: 228 DNAVLLIAGKFDPAQVLQWVSQSFG 252
               L + G FDPAQ    + Q+FG
Sbjct: 692 SQGELAVVGDFDPAQARSAIDQAFG 716


>gi|300313431|ref|YP_003777523.1| zinc protease [Herbaspirillum
           seropedicae SmR1]
          Length = 459

 Score =  112 bits (281), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 115/217 (52%), Gaps = 9/217 (4%)

Query: 44  SAEGISEYRFANGFKLLLLPDDSKPTVTVNITYLVGSRHENYGETGMAHLLEHLMFKGSP 103
            AE   ++   NG K+++  D   PT    + Y VG   E  G TG++H LEH+MFKG+ 
Sbjct: 25  QAEPARQFVLGNGMKVIVKEDRRAPTAVQMVWYKVGGIDEVNGLTGVSHALEHMMFKGTR 84

Query: 104 HNPAIPQEFSKR----GMNFNGTTWLDRTNYYETFEAGKDNLQWAIAMEADRMVNSRIAR 159
           ++     EFS+     G   N  T  D T Y++  E  K +L+  +A+EADRM N +   
Sbjct: 85  NHKV--GEFSRLVAELGGQENAFTANDFTAYFQQIE--KSHLEKVMALEADRMANLQFDA 140

Query: 160 KDLDSEMTVVRNEFE-SGETSPSRVMLKRMQSVAYDWHSYGRNTIGARSDIENVRIENLQ 218
            +   E+ V+  E     +  P  ++ + + + A+  H Y    +G   D++++ ++++ 
Sbjct: 141 AEFAKEIRVIMEERRWRTDDQPMGLLNEALNAAAWTAHPYHHPVVGWMDDLQHMSVQDIA 200

Query: 219 AFYRTYYQPDNAVLLIAGKFDPAQVLQWVSQSFGRLP 255
           A+YR +Y P+NA L++AG  D  +VL    + FG++P
Sbjct: 201 AWYRQWYAPNNATLVVAGDVDAQRVLALARKYFGKIP 237


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 807,286
Number of extensions: 30503
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 3
Length of query: 300
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,217,395
Effective search space: 261739925
Effective search space used: 261739925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)