BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0040.p (654 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312757|ref|YP_003776849.1| Zn-dependent peptidase [Herbasp... 976 0.0 gi|300313429|ref|YP_003777521.1| zinc protease-like signal pepti... 92 2e-19 >gi|300312757|ref|YP_003776849.1| Zn-dependent peptidase [Herbaspirillum seropedicae SmR1] Length = 929 Score = 976 bits (2522), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/582 (80%), Positives = 523/582 (89%) Query: 1 VEKGLATQVYAMPLSGYAPGLQMIVAQVKAGADIEPVKQAMISAVESFSTTPPTAEELAR 60 VE G+AT+VYAMPL G APGLQM+VA+VK G D++ V+QAMISAVESFST PPT EE+AR Sbjct: 337 VETGMATEVYAMPLEGMAPGLQMMVAKVKVGGDLDAVRQAMISAVESFSTQPPTPEEVAR 396 Query: 61 LRRESANNFETLQNNPQQMAVAMSNAIARGDWRLVFIERDLEQRLTSTDIAAAAGRYFRR 120 L RE+AN+FETLQNNPQQ+AVAMSNAIARGDWRL+FIERD QRL+S DIAAAAGRYFRR Sbjct: 397 LHREAANSFETLQNNPQQLAVAMSNAIARGDWRLLFIERDRMQRLSSADIAAAAGRYFRR 456 Query: 121 DNRTVGLYLPEDHPQRAEVPPAPSVESLLAQYQPRPAIASGEAFDPAPGNIEQRTTRIAP 180 DNRTVGLYLP+DHPQRAE+P AP++++LL+QYQPR AIASGEAFDPAP NIEQRTTRIAP Sbjct: 457 DNRTVGLYLPDDHPQRAEIPTAPALDTLLSQYQPRTAIASGEAFDPAPANIEQRTTRIAP 516 Query: 181 GQPPHTALKLALLPKQSRGQTVSVSMNLEFGDAGSLFGQRAVASLTAAMLMRGTRDLDRR 240 GQPPHTAL LALLPKQSRGQTVSVS++L FGDA SLFGQR VA LT AMLMRGT LDRR Sbjct: 517 GQPPHTALDLALLPKQSRGQTVSVSLHLRFGDAQSLFGQRNVAQLTEAMLMRGTDKLDRR 576 Query: 241 QLADEFTRLKINGNVYRFQTTRENLVPAFALVGEVLRHPRMDPAEFAQLKNETVAALEAT 300 QLADEF RLKING++YRFQTTRENLVPA ALVGEV RHPRMD AEF QLKNETVA LEA Sbjct: 577 QLADEFARLKINGSLYRFQTTRENLVPAIALVGEVFRHPRMDAAEFEQLKNETVAGLEAG 636 Query: 301 RKEPDARAGEALQLHFNHYPDGDWRAAQTLEQRIAAVQAVTLEQVQAFHRRFYGASHGEV 360 RK+PD RAGEAL +HF+HYP GDWRAAQTLEQRIAAV+AVTLEQV+ FHRRFYGAS GE+ Sbjct: 637 RKDPDTRAGEALSVHFDHYPAGDWRAAQTLEQRIAAVRAVTLEQVKDFHRRFYGASQGEL 696 Query: 361 AVIGDFDAEAARKAIDAAFGGWTSTAPYARVLQTWADIPPKRILIDTPDKENGVYLARQN 420 AV+GDFD AR AID AFGGWTS APYARVLQTWADIP KR+L+DTPDKENGVY ARQN Sbjct: 697 AVVGDFDPAQARSAIDQAFGGWTSAAPYARVLQTWADIPAKRLLVDTPDKENGVYFARQN 756 Query: 421 IRLRDDDPDYPALAVANYLLGGSSLKSRLADRIRQKDGLSYGINSGLQVGAISDAGYFSV 480 IRL D DPDYPALAVAN+LLGGSSLKSRLADR+RQ+DGLSYGI SGLQV A++DAG+ ++ Sbjct: 757 IRLSDTDPDYPALAVANFLLGGSSLKSRLADRVRQQDGLSYGIYSGLQVAALTDAGHLTI 816 Query: 481 RAIAAPQNLDKVDAAVREEIALLIKDGFTEEELLRAKSGILQQRNQQRAGDGGIATSWSA 540 AIAAPQNLDKVDAAVREEIAL +KDGF+EEEL RAKSGILQQRNQQRAG+ +A +W+ Sbjct: 817 YAIAAPQNLDKVDAAVREEIALALKDGFSEEELQRAKSGILQQRNQQRAGNDNVAATWTL 876 Query: 541 LMNLDRSFLWQQQLDLKLADLTLAQLNAAVRKYIDPARMTVV 582 LMN DR+FLWQQ++D KLA LTLAQ+NAA+RKY+DPARMT V Sbjct: 877 LMNQDRNFLWQQEIDRKLASLTLAQVNAALRKYVDPARMTTV 918 >gi|300313429|ref|YP_003777521.1| zinc protease-like signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 438 Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 108/411 (26%), Positives = 174/411 (42%), Gaps = 57/411 (13%) Query: 202 VSVSMNLEFGDAGSLFGQRAVASLTAAMLMRGTRD----LDRRQLADEFTRLKIN----- 252 + VS+ + G G+ +A LT A L RG D L Q+ D F + Sbjct: 48 LDVSVQFDAGQRRDPAGKAGLAELTVASLTRGVTDASGTLTEAQILDGFADVAAQQHDGA 107 Query: 253 -----GNVYRFQTTRENLVPAFALVGEVLRHPRMDPAEFAQLKNETVAALEATRKEPDAR 307 G R ++ A L+ +L HP A + + +A ++ +P+ Sbjct: 108 GQDRAGVSLRTLSSPAEREAALTLLARMLAHPSFPQASLERDRALAIANIKEELTKPEVI 167 Query: 308 AGEALQLHFNHYPDGDWRAAQTLEQRIAAVQAVTLEQVQAFHRRFYGASHGEVAVIGDFD 367 A +A F H G A ++ A++QA+T E +QAFHR Y A+ +A+IGD + Sbjct: 168 AEKA----FMHAAYGSHPYA--MDASEASMQAITREDLQAFHRAHYVANRAVIALIGDIN 221 Query: 368 AEAARKAIDAAFGGWTSTAPYARVLQTWADIPPKRILIDTPDKENGVYLARQNIRL---- 423 E AR AI +A T P L +PP ++ +E + A Q+ L Sbjct: 222 LEQAR-AIASAL---TRELPQGAALPA---LPP--VVAPKGSEERIAHPASQSHILIGAP 272 Query: 424 --RDDDPDYPALAVANYLLGGSSLKSRLADRIRQKDGLSYGINSGLQVGAISDAGYFSVR 481 + DPD+ AL V NY+LGG SRL D +R+K GLSY + SG ++ G F + Sbjct: 273 AIQRGDPDFFALTVGNYVLGGGGFVSRLTDEVREKRGLSYSVYSGFS--PLAQPGPFQIG 330 Query: 482 AIAAPQNLDKVDAAVREEIALLIKDGFTEEELLRAKSGILQQRNQQRAGDGGIA----TS 537 + + R + +++G T EL AK + GG A ++ Sbjct: 331 LQTKKEQTAEALRVTRVTLDKFMQEGPTAAELKAAKDNLA----------GGFALRIDSN 380 Query: 538 WSALMNLDRSFLWQQQLDL------KLADLTLAQLNAAVRKYIDPARMTVV 582 L NL + LD ++ +++ + AA RK++ P ++ + Sbjct: 381 AKLLENLSVIGFYGLPLDYLDHWIERIRAVSVQDVRAAFRKHVHPEELSTI 431 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.131 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,030,195 Number of extensions: 86448 Number of successful extensions: 365 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 364 Number of HSP's successfully gapped: 2 Length of query: 654 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 563 Effective length of database: 1,188,985 Effective search space: 669398555 Effective search space used: 669398555 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)