BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0032.p
         (424 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310546|ref|YP_003774638.1| hypothetical protein Hsero_1213...   494   e-141

>gi|300310546|ref|YP_003774638.1| hypothetical protein Hsero_1213
           [Herbaspirillum seropedicae SmR1]
          Length = 423

 Score =  494 bits (1271), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 235/415 (56%), Positives = 303/415 (73%), Gaps = 2/415 (0%)

Query: 10  ARAAVLASIAMMALPATAQMAEQTMREFTACNSSFFRVLAKDAAASQVLPALERKDELAW 69
           A + ++A+ +++A PA AQMAE T+REFT CNSSFF  LA D A  Q +  +ERKD +AW
Sbjct: 11  AASVLMATFSLLAPPALAQMAENTLREFTRCNSSFFSALASDTATQQAIGPVERKDGIAW 70

Query: 70  IKVKDRKNAPDNQVNFAAPVTVGDIKLLGYFDEITDLQELGRYYYWGFIVDGTVAEVIGK 129
           IKVKDRKNAP N V+F   +TVG +KLLGYFDEI+D++ELG YYYWGF+V+G+V  VIG 
Sbjct: 71  IKVKDRKNAPANHVDFNPAITVGGLKLLGYFDEISDMEELGHYYYWGFVVEGSVENVIGN 130

Query: 130 LRPMVSNADRLHPDGTDYARTEVKIGSSDWIAIKTGSSSVPQKNTIERAFIIERMENNKH 189
           LRP+VS+ADRL   G+DYARTE++ G+S W A+ TGS +VP  NTIERAFI+E MENNK+
Sbjct: 131 LRPLVSDADRLRGSGSDYARTELRSGNSGWRAVHTGSGTVPTANTIERAFIVEPMENNKN 190

Query: 190 ATRVSCSLQGAVTAAVLKTERPDVGSDDLPPLSSQEPEESDPPANVLAAIDAAAPQASVW 249
           ATRVSCSLQG+V+A VLKTERPD+G D+LP           PPANV+AA+DAAAPQ SVW
Sbjct: 191 ATRVSCSLQGSVSAQVLKTERPDLGPDELPAPPPPPAVLGKPPANVIAAVDAAAPQGSVW 250

Query: 250 RPRFSKISMQLSYHGKKPFTMLKEVENVNGLLHIREHYSGTFYVDRVSFAGLQQLRAEIY 309
           RPRFSKI   LSY G KPF  + E++NV GLLH+REHY+ + YV+R+S +GL +L ++IY
Sbjct: 251 RPRFSKIVTMLSYGGSKPFKTIIEIDNVEGLLHVREHYTTSSYVERISLSGLAELGSQIY 310

Query: 310 INRVAASGRPALTTDLTLTLPATLAAGETLTFESVMQSGSTPKRAPEASKQTCKIAQTIS 369
           +N+  A   P   T+L+L+LPATL  G+T    S +Q  + PK  P    +TC    T+ 
Sbjct: 311 LNK--APMPPLAATELSLSLPATLDPGQTFHVRSSVQRTNDPKAKPVTISKTCTTGATVP 368

Query: 370 ATDINATLTGSAVLLDCTFANGRRTEFAFLQDLGVAIQTKEGNDSMTYPEFTISK 424
           A  I+ +L GSA  L CT   G   E+AFLQDLG+A+ TKEG+  +TYPEF +++
Sbjct: 369 ANQIHRSLPGSATTLTCTQEGGTPREYAFLQDLGLALMTKEGDAQITYPEFALTR 423


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,177,245
Number of extensions: 45369
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 336
Effective length of database: 1,203,190
Effective search space: 404271840
Effective search space used: 404271840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)