BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0022.p (519 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis tra... 810 0.0 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 759 0.0 gi|300311037|ref|YP_003775129.1| methyl-accepting chemotaxis tra... 556 e-159 gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I p... 526 e-150 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 406 e-114 >gi|300313014|ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/517 (83%), Positives = 467/517 (90%), Gaps = 5/517 (0%) Query: 8 GIALSSINSLTVSIKAADAVQDERLVPLYLAREALDQTGLAARNAYVFRTDADAQKELAI 67 GI+L SIN LT SIKAAD VQ ERL+PLYLAREALDQTGLAARNAYVFRT+ADAQKELAI Sbjct: 37 GISLFSINRLTGSIKAADDVQVERLLPLYLAREALDQTGLAARNAYVFRTEADAQKELAI 96 Query: 68 VDEQKQLYLKALKDMEPHFAGNKGFEKVRAGLLQMAEELKRPRIYREGGKSEEFRDFLVN 127 VDEQKQ+YLKALKDMEPHF G+KGF+KVR GLLQMAEELKRPRIYRE GK EEFRDFLVN Sbjct: 97 VDEQKQIYLKALKDMEPHFVGHKGFDKVRTGLLQMAEELKRPRIYRESGKMEEFRDFLVN 156 Query: 128 ECSPLRRQIVLDINKLIAEVDAENDKAHEDTIAMASKASVVVAVLTIIVALISALVAFAI 187 ECSPLRRQIVLDINK+I E DA+N KAH+ T+ MA+ AS +VAVLT IVA+ISALVAF I Sbjct: 157 ECSPLRRQIVLDINKVIEEADADNIKAHQTTVDMAAMASSLVAVLTGIVAVISALVAFVI 216 Query: 188 TRGLLKQLGGEPAYAADIAQQIAAGDLTSEVNVKAGDTTSLLFAIKKMRDSLVGIVGRVR 247 TR LLKQLGGEPAYAADIAQQIA+GDLT++V+ K GDTTSLLFAIKKMRD+L IVG+VR Sbjct: 217 TRSLLKQLGGEPAYAADIAQQIASGDLTADVDAKPGDTTSLLFAIKKMRDNLAAIVGKVR 276 Query: 248 EGTQAIEQASTEIATGNLDLSARTEQQAGALEETASAMEELMSTVKQNADNAKQASELAV 307 EGT AIEQAS EIATGN+DLS+RTEQQAGALEETASAMEELMSTVKQNADNA+QAS+LAV Sbjct: 277 EGTHAIEQASAEIATGNMDLSSRTEQQAGALEETASAMEELMSTVKQNADNARQASQLAV 336 Query: 308 SASDVATQGGEVVGKVVSTMEGINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGE 367 SASDVA+QGG+VVG+VVSTMEGINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGE Sbjct: 337 SASDVASQGGQVVGQVVSTMEGINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGE 396 Query: 368 QGRGFAVVASEVRSLAQRSATAAKEITELINDSVAQIAQGSSLVEQAGMTMENVVTSVKR 427 QGRGFAVVASEVRSLAQRSATAAKEIT+LINDSV QI QGSSLV QAG TMENVVTSVKR Sbjct: 397 QGRGFAVVASEVRSLAQRSATAAKEITDLINDSVGQIEQGSSLVGQAGATMENVVTSVKR 456 Query: 428 VTDVVAEISHASQEQSHGITQVNLAITHMDEATQQNSALVEEAAAAANAMMEQAGELAGL 487 VTDVVAEISHASQEQSHGI QVNLAITHMDEATQQNSALVEEAAAAAN+M QA +LAGL Sbjct: 457 VTDVVAEISHASQEQSHGIAQVNLAITHMDEATQQNSALVEEAAAAANSMKTQAEQLAGL 516 Query: 488 VSTFKLDDAKGFATVTGI----GRN-KVAVVRALALR 519 VSTFKL + V+ + GR + V R+LAL+ Sbjct: 517 VSTFKLAHSPAPGPVSAVVGAMGRRANLPVGRSLALK 553 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/494 (80%), Positives = 447/494 (90%) Query: 1 MLTFLLAGIALSSINSLTVSIKAADAVQDERLVPLYLAREALDQTGLAARNAYVFRTDAD 60 +LT L++GI+LSSI +LT SIKA AVQD++L PLY AREALDQTG+AARNAYVFR+DAD Sbjct: 20 VLTILVSGISLSSIRALTSSIKAVLAVQDQKLAPLYAAREALDQTGIAARNAYVFRSDAD 79 Query: 61 AQKELAIVDEQKQLYLKALKDMEPHFAGNKGFEKVRAGLLQMAEELKRPRIYREGGKSEE 120 AQKELAIVDEQKQLYLKA+KD+ P FAGNK FEKVR+G+LQMAEELKRPR+YRE G+SEE Sbjct: 80 AQKELAIVDEQKQLYLKAIKDLGPLFAGNKEFEKVRSGMLQMAEELKRPRLYRESGRSEE 139 Query: 121 FRDFLVNECSPLRRQIVLDINKLIAEVDAENDKAHEDTIAMASKASVVVAVLTIIVALIS 180 +RDFLVNECSPLRRQIV DI ++A+V+AEN++A + T MA A++ VAVLT++V +IS Sbjct: 140 YRDFLVNECSPLRRQIVSDIGTVLAQVEAENNRAQDATDKMAQLAALTVAVLTLVVVVIS 199 Query: 181 ALVAFAITRGLLKQLGGEPAYAADIAQQIAAGDLTSEVNVKAGDTTSLLFAIKKMRDSLV 240 L+A +TRGLLKQLGGEP YAA IAQQIA GDLT+ V K GD +SLLFAIK MRDSLV Sbjct: 200 ILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKTGDNSSLLFAIKNMRDSLV 259 Query: 241 GIVGRVREGTQAIEQASTEIATGNLDLSARTEQQAGALEETASAMEELMSTVKQNADNAK 300 IV +VR+GT IEQAS+EIA+GNLDLS+RTEQQA +LEETASAMEELM+TVKQNADNAK Sbjct: 260 SIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNADNAK 319 Query: 301 QASELAVSASDVATQGGEVVGKVVSTMEGINASSRKIVDIISVIDGIAFQTNILALNAAV 360 QAS+LAVSAS+VA+QGGEVV +VV+TM+GINASSRKIVDIISVIDGIAFQTNILALNAAV Sbjct: 320 QASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALNAAV 379 Query: 361 EAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVAQIAQGSSLVEQAGMTMEN 420 EAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSV+QI +GSSLVEQAG TMEN Sbjct: 380 EAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQTMEN 439 Query: 421 VVTSVKRVTDVVAEISHASQEQSHGITQVNLAITHMDEATQQNSALVEEAAAAANAMMEQ 480 VV SVKRVTDVVAEIS ASQEQSHGITQVN AITHMDEATQQNSALVEEAAAAAN+M EQ Sbjct: 440 VVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAANSMKEQ 499 Query: 481 AGELAGLVSTFKLD 494 AG L+GLV+TF+LD Sbjct: 500 AGALSGLVATFRLD 513 >gi|300311037|ref|YP_003775129.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 556 bits (1434), Expect = e-159, Method: Compositional matrix adjust. Identities = 304/480 (63%), Positives = 381/480 (79%) Query: 14 INSLTVSIKAADAVQDERLVPLYLAREALDQTGLAARNAYVFRTDADAQKELAIVDEQKQ 73 INSL +I A+ +++E+L PLYLAREALDQTG+AARNAYVF +DADA+ EL IVDEQK Sbjct: 35 INSLRETIVYANKLKNEQLEPLYLAREALDQTGIAARNAYVFVSDADAKNELNIVDEQKA 94 Query: 74 LYLKALKDMEPHFAGNKGFEKVRAGLLQMAEELKRPRIYREGGKSEEFRDFLVNECSPLR 133 +YL+ L+ +EP A GF VR GLLQMAEELKRPR YR+ G E +RDFLVNECSPLR Sbjct: 95 IYLQQLQLLEPRLADRAGFAAVREGLLQMAEELKRPRRYRDSGAMEAYRDFLVNECSPLR 154 Query: 134 RQIVLDINKLIAEVDAENDKAHEDTIAMASKASVVVAVLTIIVALISALVAFAITRGLLK 193 R+IV +IN+LI ++ AE+ A + A +A + +++L + LI+ ++AF ITR LL+ Sbjct: 155 RKIVANINQLIDQISAESTTAGDTAENAAKQALLFISLLAGLALLIAVVIAFFITRSLLR 214 Query: 194 QLGGEPAYAADIAQQIAAGDLTSEVNVKAGDTTSLLFAIKKMRDSLVGIVGRVREGTQAI 253 QLGGEPAYA IAQ+IA GDL +V ++ D +SLL+AIK MRDSL IV +VR+GT +I Sbjct: 215 QLGGEPAYAMGIAQRIAHGDLAVDVVTRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSI 274 Query: 254 EQASTEIATGNLDLSARTEQQAGALEETASAMEELMSTVKQNADNAKQASELAVSASDVA 313 E+A +EI++GN DLS RTE+QA +LEETASAME++ S V+Q+ADNA QA++LA SAS +A Sbjct: 275 ERACSEISSGNADLSGRTERQASSLEETASAMEQITSAVRQSADNAIQANQLAGSASSIA 334 Query: 314 TQGGEVVGKVVSTMEGINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 373 +GG+++G VV+TME I+ SS KIVDIISVIDGIAFQTNILALNAAVEAARAGE GRGFA Sbjct: 335 LKGGQMMGDVVATMEDIHHSSVKIVDIISVIDGIAFQTNILALNAAVEAARAGEGGRGFA 394 Query: 374 VVASEVRSLAQRSATAAKEITELINDSVAQIAQGSSLVEQAGMTMENVVTSVKRVTDVVA 433 VVASEVR+LAQRSA AAKEI ELI+ SVA++ GS LV+ AG TM +V SV+ V+ V+A Sbjct: 395 VVASEVRTLAQRSAAAAKEIKELISASVAKVESGSGLVKGAGETMGELVGSVQNVSKVIA 454 Query: 434 EISHASQEQSHGITQVNLAITHMDEATQQNSALVEEAAAAANAMMEQAGELAGLVSTFKL 493 EI+ +S+EQS GI QVN AI+HMDE TQQNSALVE++AAAA A+ QA LA LVSTFK+ Sbjct: 455 EITASSREQSTGIEQVNDAISHMDEVTQQNSALVEQSAAAAEALTAQAQSLARLVSTFKV 514 >gi|300313891|ref|YP_003777983.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 526 bits (1354), Expect = e-150, Method: Compositional matrix adjust. Identities = 294/498 (59%), Positives = 367/498 (73%), Gaps = 2/498 (0%) Query: 1 MLTFLLAGIALSSINSLTVSIKAADAVQDERLVPLYLAREALDQTGLAARNAYVFRTDAD 60 +L +L AL +N+++ +++ + V D +L PLY+AREALDQTGLAARNAY+F A+ Sbjct: 22 VLMLILITFALMRMNAISAAVQYQETVTDTKLEPLYVAREALDQTGLAARNAYIFHDQAE 81 Query: 61 AQKELAIVDEQKQLYLKALKDMEPHFAGNKGFEKVRAGLLQMAEELKRPRIYREGGKSEE 120 A KELA++D+QK LYL AL+ +EP AG FEK +AGLL MAEELKRPR YRE G+ E Sbjct: 82 ALKELALLDQQKALYLDALRQLEPVLAGQAQFEKAKAGLLAMAEELKRPRKYRESGQMEA 141 Query: 121 FRDFLVNECSPLRRQIVLDINKLIAEVDAENDKAHEDTIAM-ASKASVVVAVLTIIVALI 179 + +FLV ECSPLRRQIV DI+ L+ V E A + A+ AS +++A II+ + Sbjct: 142 YGEFLVKECSPLRRQIVQDIDALLKVVQRETKAAGDRADALFASSLRLIMACAAIILG-V 200 Query: 180 SALVAFAITRGLLKQLGGEPAYAADIAQQIAAGDLTSEVNVKAGDTTSLLFAIKKMRDSL 239 S A+ I + LL QLGGEP YA +I +IA G+L++ V+ GD +SLL+ I+ MRD L Sbjct: 201 SIATAWLIRKSLLGQLGGEPRYAVEITGRIAHGELSAPVDTAPGDRSSLLYEIRVMRDKL 260 Query: 240 VGIVGRVREGTQAIEQASTEIATGNLDLSARTEQQAGALEETASAMEELMSTVKQNADNA 299 +V +VR GT AI AS+EIA GN +LS RTEQQA LE+T +AM+EL V++NADNA Sbjct: 261 ASLVQQVRVGTHAIADASSEIAVGNQNLSERTEQQADTLEKTVAAMDELTQAVRRNADNA 320 Query: 300 KQASELAVSASDVATQGGEVVGKVVSTMEGINASSRKIVDIISVIDGIAFQTNILALNAA 359 +QA LA SASDVA+Q G VV +VV TM I+ASSRKIVDII VIDGIAFQTNILALNAA Sbjct: 321 QQAKHLAGSASDVASQAGTVVQQVVDTMGQIDASSRKIVDIIGVIDGIAFQTNILALNAA 380 Query: 360 VEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVAQIAQGSSLVEQAGMTME 419 VEAARAGEQGRGFAVVA+EVRSLAQRSA+AA+EI LI+ SV+ + GS LVEQAG TM+ Sbjct: 381 VEAARAGEQGRGFAVVAAEVRSLAQRSASAAREIKSLIDSSVSSVTDGSRLVEQAGATMQ 440 Query: 420 NVVTSVKRVTDVVAEISHASQEQSHGITQVNLAITHMDEATQQNSALVEEAAAAANAMME 479 +VV SV+RV+ VV EIS ASQ QS GI +VN AI +DE TQQN+ALVEEAAAA+ +M + Sbjct: 441 DVVESVQRVSAVVVEISAASQAQSDGILEVNTAIARLDENTQQNAALVEEAAAASQSMSQ 500 Query: 480 QAGELAGLVSTFKLDDAK 497 QA L LV FKL A+ Sbjct: 501 QADHLNQLVGAFKLSPAQ 518 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 406 bits (1043), Expect = e-114, Method: Compositional matrix adjust. Identities = 226/378 (59%), Positives = 289/378 (76%) Query: 120 EFRDFLVNECSPLRRQIVLDINKLIAEVDAENDKAHEDTIAMASKASVVVAVLTIIVALI 179 E FL + P+++ +++ L A D N +A E + S+A +++ +++ I + Sbjct: 147 ELAQFLKEQYLPVQKSWQVELKALAALEDQLNKEAAEASAVAYSRARMLMLLISAIGVVT 206 Query: 180 SALVAFAITRGLLKQLGGEPAYAADIAQQIAAGDLTSEVNVKAGDTTSLLFAIKKMRDSL 239 + L AF +TR LL++LGGEP YA IA QIA GDL ++ +AGD SL+ A++ MRD L Sbjct: 207 AVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLAVVIDTRAGDHDSLMAAMRVMRDKL 266 Query: 240 VGIVGRVREGTQAIEQASTEIATGNLDLSARTEQQAGALEETASAMEELMSTVKQNADNA 299 IV VR+G++ I AS+EIA GNLDLS RTEQQAGALEETAS+ME+L STVKQNA+NA Sbjct: 267 AAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQAGALEETASSMEQLNSTVKQNAENA 326 Query: 300 KQASELAVSASDVATQGGEVVGKVVSTMEGINASSRKIVDIISVIDGIAFQTNILALNAA 359 QA++LA++ASDVA QGG +V +VV TM+ INASS+K+ DI+SVIDGIAFQTNILALNAA Sbjct: 327 HQANDLALAASDVAVQGGSIVSQVVQTMQSINASSQKVADIVSVIDGIAFQTNILALNAA 386 Query: 360 VEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVAQIAQGSSLVEQAGMTME 419 VEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEI LI DSV ++ GS LVEQAG TM Sbjct: 387 VEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMH 446 Query: 420 NVVTSVKRVTDVVAEISHASQEQSHGITQVNLAITHMDEATQQNSALVEEAAAAANAMME 479 ++VTS++RVTDV+ EI+HA++EQS GI QVN AI +D+ TQQN+ALVE+AAAAA ++ E Sbjct: 447 DIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQIDDMTQQNAALVEQAAAAARSLQE 506 Query: 480 QAGELAGLVSTFKLDDAK 497 QA L LVS F+LD A+ Sbjct: 507 QAAGLQQLVSVFRLDAAQ 524 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.127 0.323 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,086,184 Number of extensions: 35233 Number of successful extensions: 489 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 233 Number of HSP's successfully gapped: 72 Length of query: 519 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 430 Effective length of database: 1,198,455 Effective search space: 515335650 Effective search space used: 515335650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)