BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0016.p (444 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 170 2e-43 gi|300310885|ref|YP_003774977.1| methyl-accepting chemotaxis tra... 169 5e-43 gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis tra... 169 6e-43 gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis tra... 168 8e-43 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 168 1e-42 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 170 bits (430), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 95/183 (51%), Positives = 129/183 (70%) Query: 257 QTHATQTLQAAVGGLSQALSTGSASAQQANDLVKATSSIAEQGGVVMQEVVNKMAAINAS 316 Q + + +A+ L+ + + +A+QAN L + S +A QGG V+ +VV+ M +INAS Sbjct: 295 QASSLEETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINAS 354 Query: 317 AAKITEIIGVIDEITFRTNLLALNAAVEAARAGEHGRGFAVVAGEVRSLAQRTAASASEI 376 + KI +IIGVID I F+TN+LALNAAVEAARAGE GRGFAVVA EVRSLAQR+A +A EI Sbjct: 355 SRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEI 414 Query: 377 KTLIGGSVNEARQGTELVMNAGKTMSTMVNSINDITGIIETISTSANDQINEIEQVNEAV 436 K LI GSV + G++LV AG TMS +V S+ +T I+ IS+++ +Q IEQVN A+ Sbjct: 415 KELIEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAI 474 Query: 437 TQL 439 Q+ Sbjct: 475 AQM 477 >gi|300310885|ref|YP_003774977.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 551 Score = 169 bits (427), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 99/191 (51%), Positives = 131/191 (68%), Gaps = 4/191 (2%) Query: 253 DVSIQT-HATQTLQAAVGGLSQALST---GSASAQQANDLVKATSSIAEQGGVVMQEVVN 308 D+S +T H +L+ + + ST SA+A+QA ++ ++ S IA QGG ++ +VV Sbjct: 315 DLSARTEHQASSLEETASSMEELTSTVQQNSANARQAAEMAQSASGIAGQGGELVGDVVA 374 Query: 309 KMAAINASAAKITEIIGVIDEITFRTNLLALNAAVEAARAGEHGRGFAVVAGEVRSLAQR 368 M I+ASA KI +IIGVID I F+TN+LALNAAVEAARAGE GRGFAVVA EVRSLAQR Sbjct: 375 TMDDIDASARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQR 434 Query: 369 TAASASEIKTLIGGSVNEARQGTELVMNAGKTMSTMVNSINDITGIIETISTSANDQINE 428 +AA+A EIK LIG SV + G LV AG+TM +V S+ + +I IS + +Q Sbjct: 435 SAAAAKEIKVLIGDSVEKVDSGAHLVKKAGQTMQEIVKSVAQVNAVINQISNAGEEQRAG 494 Query: 429 IEQVNEAVTQL 439 IEQVN+A+TQ+ Sbjct: 495 IEQVNQAITQM 505 >gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 169 bits (427), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 90/171 (52%), Positives = 126/171 (73%) Query: 266 AAVGGLSQALSTGSASAQQANDLVKATSSIAEQGGVVMQEVVNKMAAINASAAKITEIIG 325 +A+G L+ + + +A+QA++L ++ S +A Q G V+ EV+ M AINAS+ KI +II Sbjct: 327 SAMGQLTTTVKQNADNARQADELAQSASGVAGQAGKVVDEVILTMEAINASSLKIVDIIS 386 Query: 326 VIDEITFRTNLLALNAAVEAARAGEHGRGFAVVAGEVRSLAQRTAASASEIKTLIGGSVN 385 VID I F+TN+LALNAAVEAARAGE GRGFAVVA EVRSLAQR+A++A EIK LI SVN Sbjct: 387 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVN 446 Query: 386 EARQGTELVMNAGKTMSTMVNSINDITGIIETISTSANDQINEIEQVNEAV 436 + + G+ LV+ AG TM +V S+ ++GI+ IS ++ +Q + I QVN+A+ Sbjct: 447 KVQSGSRLVLQAGSTMEEVVTSVRRVSGIVRDISVASGEQSDGIAQVNQAI 497 >gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 532 Score = 168 bits (426), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 92/169 (54%), Positives = 123/169 (72%) Query: 271 LSQALSTGSASAQQANDLVKATSSIAEQGGVVMQEVVNKMAAINASAAKITEIIGVIDEI 330 L+ + +A+AQ AN L + +A QGG V+ +VV M +INAS+ KI +II VID I Sbjct: 310 LTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIVDIISVIDGI 369 Query: 331 TFRTNLLALNAAVEAARAGEHGRGFAVVAGEVRSLAQRTAASASEIKTLIGGSVNEARQG 390 F+TN+LALNAAVEAARAGE GRGFAVVA EVRSLAQR+AA+A EIK LI SV + G Sbjct: 370 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDDSVGKVDAG 429 Query: 391 TELVMNAGKTMSTMVNSINDITGIIETISTSANDQINEIEQVNEAVTQL 439 T LV AG+TM +V+SI ++ ++ I+T++++Q + IEQV EA+TQ+ Sbjct: 430 THLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQM 478 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 89/158 (56%), Positives = 119/158 (75%) Query: 282 AQQANDLVKATSSIAEQGGVVMQEVVNKMAAINASAAKITEIIGVIDEITFRTNLLALNA 341 A+QA+ L + S++AEQGG V+ +VV+ M AINAS+ KI +II VID I F+TN+LALNA Sbjct: 320 ARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVDIISVIDGIAFQTNILALNA 379 Query: 342 AVEAARAGEHGRGFAVVAGEVRSLAQRTAASASEIKTLIGGSVNEARQGTELVMNAGKTM 401 AVEAARAGE GRGFAVVA EVR+LAQR+A++A EIK LI SV + G+ LV AG TM Sbjct: 380 AVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELINDSVGKVDDGSRLVEQAGNTM 439 Query: 402 STMVNSINDITGIIETISTSANDQINEIEQVNEAVTQL 439 +V+S+ +T I+ IS ++ +Q + IEQ+N A+TQ+ Sbjct: 440 QEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQM 477 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.130 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,104,594 Number of extensions: 42148 Number of successful extensions: 366 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 312 Number of HSP's successfully gapped: 73 Length of query: 444 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 356 Effective length of database: 1,203,190 Effective search space: 428335640 Effective search space used: 428335640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)