BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0013.p
         (153 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311201|ref|YP_003775293.1| threonine efflux protein [Herba...    80   7e-17
gi|300314064|ref|YP_003778156.1| threonine efflux protein [Herba...    58   3e-10

>gi|300311201|ref|YP_003775293.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score = 80.1 bits (196), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 11/161 (6%)

Query: 1   VAAVGMGALLMASQMAFTVVKVLGAAYLIWLGCKLFFARV--ELGGQPLEPQQRSIAGYV 58
           +A  G+G+LL+AS+ AF V+KV GA YLI+LG   + ARV  E  G+ L+    S   + 
Sbjct: 56  IAGAGVGSLLVASETAFNVIKVAGALYLIYLGFSQWRARVPSEEQGEALDAANASARAHA 115

Query: 59  RKE--------FLVAIGNPKAILVFTAFFPQFVVPENYLS-SFLTLGAIFLALEVVAIAA 109
           R+         FL    NPK I+   A  PQF+  +  L    L L    +A+++V +  
Sbjct: 116 RQTWWQRCMTGFLTNATNPKGIVFMVAVLPQFIDHDRPLWLQLLVLAVTMVAVDLVVMHG 175

Query: 110 YAYAGTRLSGLMQNARGLRWMNRISGGMMIFFGTLLALAKR 150
           YA+A +RL    ++ + +R  NR  GG+++  G  L   KR
Sbjct: 176 YAFAASRLQRFFRSQKAIRAQNRFFGGVLMLVGAGLFFFKR 216


>gi|300314064|ref|YP_003778156.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score = 58.2 bits (139), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 5/84 (5%)

Query: 17  FTVVKVLGAAYLIWLGCKLFFARVELGGQPLEPQQRSIAGYVRKEFLVAIGNPKAILVFT 76
           F  ++ LGAAYL +LG +L FAR E GG  + P   S A   R+ FLV + NPKAI+ + 
Sbjct: 79  FHGLQYLGAAYLAYLGARLLFARGE-GGGTVVP--FSNAAEFRRGFLVTLFNPKAIVFYM 135

Query: 77  AFFPQFVVPENYLS--SFLTLGAI 98
           AFFP F+ P       +F+T+GA+
Sbjct: 136 AFFPLFLDPATQQGALTFITMGAV 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.141    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 476,748
Number of extensions: 18374
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 153
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 76
Effective length of database: 1,255,275
Effective search space: 95400900
Effective search space used: 95400900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 126 (53.1 bits)