BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0012.p (125 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310245|ref|YP_003774337.1| receiver domain-containing prot... 154 1e-39 gi|300312802|ref|YP_003776894.1| two component response regulato... 148 1e-37 gi|300313044|ref|YP_003777136.1| two component response regulato... 108 1e-25 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 59 8e-11 gi|300313045|ref|YP_003777137.1| two component sensor histidine ... 58 3e-10 >gi|300310245|ref|YP_003774337.1| receiver domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 125 Score = 154 bits (390), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 75/125 (60%), Positives = 90/125 (72%) Query: 1 MNPSSHARTLLIVEDNKDVRNIFAEVFQGVGYHVIEAGNGEEALALMAHEHPAVSVVLTD 60 M + R +LI+EDN VR IFAEVF GY V +AGNG E L ++ VSVVLTD Sbjct: 1 MPDNPRTRAILIIEDNLYVREIFAEVFDAAGYEVHQAGNGAEGLEILLSSPGRVSVVLTD 60 Query: 61 LRMPVMDGLELATRIKGDERFSAIPVVLLSATPMSNSWQALEVFSALLTKPCSFEHLLST 120 LRMPVMDGL AT +K D RF+ +PVVLLSATPM+NSW+A +VF+ALL KPC F LL T Sbjct: 61 LRMPVMDGLRFATELKKDVRFAGLPVVLLSATPMANSWEARKVFAALLVKPCPFSQLLDT 120 Query: 121 IESVQ 125 +E+VQ Sbjct: 121 VEAVQ 125 >gi|300312802|ref|YP_003776894.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 125 Score = 148 bits (374), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 73/124 (58%), Positives = 94/124 (75%) Query: 1 MNPSSHARTLLIVEDNKDVRNIFAEVFQGVGYHVIEAGNGEEALALMAHEHPAVSVVLTD 60 M+ +S T+L+VEDN +VR +++EV + GY V+EA NG AL+++ V V+LTD Sbjct: 1 MHGASGTSTVLVVEDNSEVRALYSEVLRSDGYRVLEAANGTLALSVLFDRPGDVDVILTD 60 Query: 61 LRMPVMDGLELATRIKGDERFSAIPVVLLSATPMSNSWQALEVFSALLTKPCSFEHLLST 120 LRMP+MDGLELA +K DERFSAIP+VLLSATPM+NSW A + F+ALLTKPC LLST Sbjct: 61 LRMPLMDGLELAETLKADERFSAIPLVLLSATPMTNSWHARKNFAALLTKPCPLNLLLST 120 Query: 121 IESV 124 IE+V Sbjct: 121 IEAV 124 >gi|300313044|ref|YP_003777136.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 122 Score = 108 bits (270), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 59/118 (50%), Positives = 79/118 (66%), Gaps = 5/118 (4%) Query: 5 SHARTLLIVEDNKDVRNIFAEVFQGVGYHVIEAGNGEEALALMAHEHPAVSVVLTDLRMP 64 S +T+L+VED+ D R++ E+ G V+ A +G EA+ALM + P S+VLTDLRMP Sbjct: 4 SKQKTVLVVEDHPDSRDLLCEILAHKGLSVMAASDGVEAIALMQSQAP--SLVLTDLRMP 61 Query: 65 VMDGLELATRIKGDERFSAIPVVLLSAT-PMSNSWQALEVFSALLTKPCSFEHLLSTI 121 MDG+ELA IK DERF IPV L+SA P +N+ + SA L KPCS +HLL+T+ Sbjct: 62 RMDGMELARYIKSDERFGHIPVALISANLPAANAR--VPEISAFLLKPCSVDHLLTTV 117 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 59.3 bits (142), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 62/124 (50%), Gaps = 10/124 (8%) Query: 6 HARTLLIVEDNKDVRNIFA--EVFQGVGYHVIEAGNGEEALALM--AHEHP--AVSVVLT 59 R +L+VED DVRNIFA V + G V A NG EAL + + + P + +VL Sbjct: 1033 EGRRILVVED--DVRNIFALSSVLEPKGMKVEIARNGREALQALQRSQDKPDAPIDLVLM 1090 Query: 60 DLRMPVMDGLELATRIKGDERFSAIPVVLLSATPMSNSWQALEVFSA--LLTKPCSFEHL 117 D+ MP MDGL I+ + +P++ L+A M + + A + KP E L Sbjct: 1091 DIMMPEMDGLTAMREIRKQAVWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKL 1150 Query: 118 LSTI 121 LS + Sbjct: 1151 LSLV 1154 >gi|300313045|ref|YP_003777137.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 120 Score = 57.8 bits (138), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 3/112 (2%) Query: 10 LLIVEDNKDVRNIFAEVFQGVGYHVIEAGNGEEALALMAHEHPAVSVVLTDLRMPVMDGL 69 LLIV+D D+ + ++ + + GY VI A +G +AL P +V++D MPVM+GL Sbjct: 4 LLIVDDEVDITDTYSMLLELHGYRVITACHGADALDKARQHWP--DLVISDCMMPVMNGL 61 Query: 70 ELATRIKGDERFSAIPVVLLSATPMSNSWQALEVFSALLTKPCSFEHLLSTI 121 EL ++ + +PV+L S P + + L KP F+ LL I Sbjct: 62 ELCAALRRLPGGAQLPVILCSGAPERHDLSQ-SSHNLFLRKPVFFDRLLEEI 112 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.132 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 371,858 Number of extensions: 13353 Number of successful extensions: 131 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 10 Length of query: 125 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 50 Effective length of database: 1,264,745 Effective search space: 63237250 Effective search space used: 63237250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)