BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0008.p (211 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310619|ref|YP_003774711.1| OmpA protein [Herbaspirillum se... 307 3e-85 gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspiri... 61 7e-11 gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbasp... 57 2e-09 >gi|300310619|ref|YP_003774711.1| OmpA protein [Herbaspirillum seropedicae SmR1] Length = 190 Score = 307 bits (787), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 153/190 (80%), Positives = 173/190 (91%) Query: 22 LLAVVALLAACAGPAERFVLLPQADGSASSIVVKTASGETALTSPYAAVETRGGKPAPTQ 81 + A+ LLA CAGP ERF+LLPQ DGSASSIVVKTA+GETAL +PYA+VET GGK T Sbjct: 1 MAALAVLLAGCAGPRERFLLLPQPDGSASSIVVKTATGETALATPYASVETAGGKVDKTL 60 Query: 82 TLSAAEVDRRYAEVMRSLPARPRSYDLLFELGTDRLTPASQELLKKAIAEIKEFPAGEFI 141 T++ A+V++RYA+V+ SLPARPRSYDLLFELGTDRLTPASQ+ LKKAIAEIK+FPAGEF+ Sbjct: 61 TVAPADVEKRYADVLGSLPARPRSYDLLFELGTDRLTPASQDALKKAIAEIKDFPAGEFV 120 Query: 142 LTGHADSIGSDATNDALSLRRARLIERELQRAEVKALSIEVIGKGARDPRVPQKRGVAEP 201 LTGHAD+IGS+ NDALSLRRARLIEREL+RA+VKALSIEVIGKGARDPRVPQKRGVAEP Sbjct: 121 LTGHADNIGSETNNDALSLRRARLIERELRRADVKALSIEVIGKGARDPRVPQKRGVAEP 180 Query: 202 RNRFVEIKIR 211 RNRFVEIKIR Sbjct: 181 RNRFVEIKIR 190 >gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 60.8 bits (146), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 51/104 (49%) Query: 107 DLLFELGTDRLTPASQELLKKAIAEIKEFPAGEFILTGHADSIGSDATNDALSLRRARLI 166 D+ F+ G + P + +L + A + E PA + GH D+ GSDA ND LSL+RA Sbjct: 109 DISFDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSLQRASRT 168 Query: 167 ERELQRAEVKALSIEVIGKGARDPRVPQKRGVAEPRNRFVEIKI 210 L V A + G+G+ +P V RNR VEI + Sbjct: 169 RDYLSSRGVAANRFSIQGRGSHEPLVANTSDANRARNRRVEIFV 212 >gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 203 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 48/104 (46%) Query: 107 DLLFELGTDRLTPASQELLKKAIAEIKEFPAGEFILTGHADSIGSDATNDALSLRRARLI 166 D F+ L PA + L + + +K I GH DSIGS A N LS+RRA + Sbjct: 95 DAFFDFDKATLKPAGKAKLDELVGNLKAINLEVIIAVGHTDSIGSVAYNQKLSVRRAESV 154 Query: 167 ERELQRAEVKALSIEVIGKGARDPRVPQKRGVAEPRNRFVEIKI 210 + L V+A + GKG P K +NR VEI++ Sbjct: 155 KAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEV 198 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 606,244 Number of extensions: 23376 Number of successful extensions: 98 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 3 Length of query: 211 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 130 Effective length of database: 1,236,335 Effective search space: 160723550 Effective search space used: 160723550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)