BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0007.p
         (146 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310618|ref|YP_003774710.1| hypothetical protein Hsero_1286...   217   3e-58
gi|300309650|ref|YP_003773742.1| hypothetical protein Hsero_0308...    65   3e-12

>gi|300310618|ref|YP_003774710.1| hypothetical protein Hsero_1286
           [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  217 bits (553), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 103/130 (79%), Positives = 118/130 (90%)

Query: 17  QEATASQAGIVKVLQGDVRAERSGKTRPLATGERLYAGDRVLTGAASAVGFTLRDDTLIS 76
           Q+  A+QA IVKV++G+V+A+R GKTRPLA GERLY GDRVLT AAS+VGFTLRDDTLIS
Sbjct: 37  QQDGATQAAIVKVMRGEVQAQREGKTRPLAVGERLYEGDRVLTAAASSVGFTLRDDTLIS 96

Query: 77  LGSNSQFLLEQFAYNDKTDEGSVAVRLTKGTLRYVSGLIGKHSPESQRLSTPTATIGIRG 136
           LG NSQFLLEQF +N+KTDEG++AVR+ KGTLRYVSGLIGKH+PE Q+ STPTATIGIRG
Sbjct: 97  LGPNSQFLLEQFVFNEKTDEGNIAVRMVKGTLRYVSGLIGKHAPERQQFSTPTATIGIRG 156

Query: 137 TDFIVEVAGE 146
           TDFIVEVAGE
Sbjct: 157 TDFIVEVAGE 166


>gi|300309650|ref|YP_003773742.1| hypothetical protein Hsero_0308
           [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score = 64.7 bits (156), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 21  ASQAGIVKVLQGDVRAERSGKTRP-LATGERLYAGDRVLTGAASAVGFTLRDDTLISLGS 79
           A   G V  L G + A  +  TR  L+    +  GD ++T   +       D+  I L  
Sbjct: 36  AQVVGQVTHLSGVLTARHADGTRAVLSVKSAILQGDTLITERETYTRVKFVDNAEIVLRP 95

Query: 80  NSQFLLEQFAYNDKTDEG-SVAVRLTKGTLRYVSGLIGKHSPESQRLSTPTATIGIRGTD 138
            ++  + ++ Y++K  E  SVA+ L KG LR V+GL+GK + E+    TPTATIGIRGT 
Sbjct: 96  GTEVAVNKYIYDEKKPENDSVAIGLVKGGLRAVTGLVGKRNHEAVNFDTPTATIGIRGTH 155

Query: 139 F 139
           F
Sbjct: 156 F 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.130    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 373,687
Number of extensions: 14080
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 2
Length of query: 146
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,255,275
Effective search space: 86613975
Effective search space used: 86613975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)