BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0003.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312837|ref|YP_003776929.1| hypothetical protein Hsero_3542...   362   e-101

>gi|300312837|ref|YP_003776929.1| hypothetical protein Hsero_3542
           [Herbaspirillum seropedicae SmR1]
          Length = 469

 Score =  362 bits (929), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/262 (69%), Positives = 211/262 (80%), Gaps = 8/262 (3%)

Query: 1   MRSTVEEMQAARSAAQAYR------HQP--GSLQAAHVYAQLFVAAPDEAALAMGRDYLV 52
           M++T+EEMQAA SA++ Y       H P    L  A +YAQL VA PD AALA  R YLV
Sbjct: 1   MQATLEEMQAAASASRRYHPNSDPHHDPHGAGLLPARIYAQLNVAEPDAAALAQARRYLV 60

Query: 53  QQMQEAQELPCDLPQEPAALASWMEARAAEVGVAYESYLKERQQGAPRRYFSGRAHALNF 112
            Q++  Q LPC+LP     +A+WM+ARAA+VGVAYE+YL+ER+ GAPR+YFSGRAHALNF
Sbjct: 61  TQLEATQALPCELPPAGQDMAAWMQARAAQVGVAYEAYLQERRAGAPRQYFSGRAHALNF 120

Query: 113 LRCVGPTKMVDGAWLYSAIRRWRDPLFRPLILTYLEELGDGDAAMNHVTLYRSLLAANGC 172
           L  V PTK+VDGAWLYSA++ WRDP+FRPLILTYLEELGDG+ AMNHV+LYRSLL A+GC
Sbjct: 121 LLRVAPTKLVDGAWLYSAVKHWRDPVFRPLILTYLEELGDGEVAMNHVSLYRSLLQAHGC 180

Query: 173 EHGPALSEEHYVQGAIQLGLAHHGAEFEAEVFGFNLGYEQLPLHLLITAYELNELGIDPY 232
           E    LS+ HYVQGA+QL L  HG EF  E+FGFNLGYEQLPLHLLITAYELNELGIDPY
Sbjct: 181 EQADWLSQAHYVQGALQLALGWHGDEFIPEMFGFNLGYEQLPLHLLITAYELNELGIDPY 240

Query: 233 YFTLHVTIDNAASGHARKAAEA 254
           YFTLHVTIDNAASGHARKA +A
Sbjct: 241 YFTLHVTIDNAASGHARKAVDA 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 901,339
Number of extensions: 38891
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)