BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0001.p (83 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I p... 145 4e-37 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 87 2e-19 gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis tra... 85 9e-19 gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis tra... 77 4e-16 gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis tra... 75 9e-16 >gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 646 Score = 145 bits (367), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 76/81 (93%), Positives = 80/81 (98%) Query: 1 MEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDSTTQQNAALVEESAAAAISL 60 MEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMD+TTQQNAALVEESAAAAISL Sbjct: 564 MEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDTTTQQNAALVEESAAAAISL 623 Query: 61 SGQARELVQAVAVFRVGRAAL 81 SGQARELVQAVAVFR+G+ A+ Sbjct: 624 SGQARELVQAVAVFRLGQRAV 644 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 87.0 bits (214), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 46/80 (57%), Positives = 62/80 (77%) Query: 1 MEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDSTTQQNAALVEESAAAAISL 60 + E+V+S++RV+D+M I+AA+ EQ GI QV QA+TQMD TQQNAALVEE+A+A+ SL Sbjct: 440 ISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDEVTQQNAALVEEAASASQSL 499 Query: 61 SGQARELVQAVAVFRVGRAA 80 S QA+ L + V VFR+ AA Sbjct: 500 SHQAQRLSELVGVFRLPGAA 519 >gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 85.1 bits (209), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 44/76 (57%), Positives = 60/76 (78%) Query: 1 MEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDSTTQQNAALVEESAAAAISL 60 M +++ +++RV+DIM I+AA+ EQ+ GI QV AVTQMD TQQNAALVE+++AAA SL Sbjct: 437 MSDVINAVQRVTDIMSEISAASNEQSAGIDQVSHAVTQMDEATQQNAALVEQASAAAKSL 496 Query: 61 SGQARELVQAVAVFRV 76 QA+ L+Q VA+FRV Sbjct: 497 EQQAQALMQEVAIFRV 512 >gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 76.6 bits (187), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 51/80 (63%), Positives = 64/80 (80%) Query: 1 MEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDSTTQQNAALVEESAAAAISL 60 MEE+VTS+RRVS I+ I+ A+ EQ+ GIAQV QA+ MD TTQQNAALVEE+AAA+ SL Sbjct: 462 MEEVVTSVRRVSGIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNAALVEEAAAASQSL 521 Query: 61 SGQARELVQAVAVFRVGRAA 80 QA+ L QAV+VFR+ R+A Sbjct: 522 REQAKGLAQAVSVFRLERSA 541 >gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 535 Score = 75.1 bits (183), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 49/79 (62%), Positives = 64/79 (81%) Query: 1 MEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDSTTQQNAALVEESAAAAISL 60 ME++VTS++RVSDI+ I+ A+ EQ+ GIAQV QA+ MD TTQQNAALVEE+AAA+ SL Sbjct: 434 MEQVVTSVQRVSDIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQNAALVEEAAAASQSL 493 Query: 61 SGQARELVQAVAVFRVGRA 79 QA+ L QAV+VFR+ R+ Sbjct: 494 REQAKGLAQAVSVFRLERS 512 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.120 0.291 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 152,013 Number of extensions: 3065 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 63 Number of HSP's gapped: 102 Number of HSP's successfully gapped: 63 Length of query: 83 Length of database: 1,619,870 Length adjustment: 54 Effective length of query: 29 Effective length of database: 1,364,180 Effective search space: 39561220 Effective search space used: 39561220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 123 (52.0 bits)