BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0014.0030.p (162 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309981|ref|YP_003774073.1| two component response regulato... 297 3e-82 gi|300312680|ref|YP_003776772.1| two component response regulato... 143 6e-36 gi|300313818|ref|YP_003777910.1| two component transcription reg... 132 2e-32 gi|300311842|ref|YP_003775934.1| response regulator transcriptio... 129 1e-31 gi|300313680|ref|YP_003777772.1| two component response regulato... 116 9e-28 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 297 bits (760), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 147/149 (98%), Positives = 149/149 (100%) Query: 1 VLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAGGGPTVIKHGPLSF 60 VLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAGGGPTVI+HGPLS+ Sbjct: 75 VLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAGGGPTVIRHGPLSY 134 Query: 61 DQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYV 120 DQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYV Sbjct: 135 DQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYV 194 Query: 121 HRLRKKIEVGGVRIATVRGLGYCLEKLPE 149 HRLRKKIEVGGVRIATVRGLGYCLEKLPE Sbjct: 195 HRLRKKIEVGGVRIATVRGLGYCLEKLPE 223 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 143 bits (361), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 75/146 (51%), Positives = 98/146 (67%), Gaps = 1/146 (0%) Query: 1 VLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAGGGPTVIKHGPLSF 60 VL+LTA D++ RV GL+LGADDY+ KPFA EL AR++AL RR A P + G LS Sbjct: 73 VLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQ-PAQLTVGGLSL 131 Query: 61 DQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYV 120 D + A I + +ELS RE +LE L+Q R+VSK+Q++D + WGE+ + NA+EVYV Sbjct: 132 DNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGEDFTINAVEVYV 191 Query: 121 HRLRKKIEVGGVRIATVRGLGYCLEK 146 R+R KI GV I T+RG GY LEK Sbjct: 192 SRIRLKIADSGVAIRTIRGFGYMLEK 217 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 132 bits (331), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/148 (49%), Positives = 93/148 (62%), Gaps = 3/148 (2%) Query: 1 VLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAGGGPTVIKHGPLSF 60 VLILTA + RV GL++GADDY+AKPF L ELEARV+AL RR + G LSF Sbjct: 75 VLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQNNEAVTVSCGALSF 134 Query: 61 DQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYV 120 D V R G ++L L+ RE +LE L+ R G V KE+L + + S +AIE+Y+ Sbjct: 135 DTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFTLEDNASMDAIEIYI 194 Query: 121 HRLRKKIE---VGGVRIATVRGLGYCLE 145 HRLRKK+E G V I T+RGLGY L+ Sbjct: 195 HRLRKKLEHEGPGRVGITTLRGLGYLLQ 222 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 129 bits (323), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 67/144 (46%), Positives = 92/144 (63%) Query: 1 VLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAGGGPTVIKHGPLSF 60 VL+LTA VE+RV+ LDLGADDY+ KPF EL+AR+R L RR G ++ LS Sbjct: 74 VLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSGGESTNLLHCANLSI 133 Query: 61 DQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYV 120 D+ R A + Q +EL+ RE+ LLE++ R GR+ +K++L+D L + S N++E YV Sbjct: 134 DRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFTVDDNPSANSVEQYV 193 Query: 121 HRLRKKIEVGGVRIATVRGLGYCL 144 RLRKK+ I T+RGLGY L Sbjct: 194 ARLRKKLAAAAFEIRTLRGLGYQL 217 >gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 116 bits (290), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 63/144 (43%), Positives = 90/144 (62%), Gaps = 2/144 (1%) Query: 1 VLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGAGGGPTVIKHGPLSF 60 VLI TA D+V RV GLD GADDY+ KPF L EL AR+RAL+RR AG ++++ + Sbjct: 75 VLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQAGRAESLVQVREVIL 134 Query: 61 DQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYV 120 + + + + LSARE LL+ + R G ++S+ QL + L W + + +NA+EV++ Sbjct: 135 NPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYGWDDSIESNAVEVHI 194 Query: 121 HRLRKKIEVGGVRIATVRGLGYCL 144 H LRKK VG I VRG+GY + Sbjct: 195 HALRKK--VGSDFIKNVRGVGYLV 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 468,188 Number of extensions: 18566 Number of successful extensions: 131 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 24 Length of query: 162 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 84 Effective length of database: 1,250,540 Effective search space: 105045360 Effective search space used: 105045360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)