BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0014.0029.p (380 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 395 e-111 gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 197 2e-51 gi|300314014|ref|YP_003778106.1| two component sensor histidine ... 152 4e-38 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 148 7e-37 gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 124 1e-29 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 395 bits (1015), Expect = e-111, Method: Compositional matrix adjust. Identities = 203/210 (96%), Positives = 206/210 (98%) Query: 146 MPQPPADEDRITLGTVQFRNDILHGSDVRIATLQVDLRRSAAQRAAQREPRIATVQVGET 205 MPQPP DEDR T+GTVQFRNDILHGSDVRIATLQVDLRRSAAQRAA REPR+ATVQVGET Sbjct: 1 MPQPPPDEDRSTVGTVQFRNDILHGSDVRIATLQVDLRRSAAQRAASREPRLATVQVGET 60 Query: 206 LEKRAQLANEIIKGVILPQFVILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPID 265 LEKRAQLANEIIKGVILPQF+ILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPID Sbjct: 61 LEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPID 120 Query: 266 SGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQDDQ 325 SGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQDDQ Sbjct: 121 SGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQDDQ 180 Query: 326 DDVRRSLEQLAKSSETATRLVNQLLSLARA 355 DVRRSLEQLAKSSETATRLVNQLLSLARA Sbjct: 181 VDVRRSLEQLAKSSETATRLVNQLLSLARA 210 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 197 bits (500), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 121/313 (38%), Positives = 179/313 (57%), Gaps = 14/313 (4%) Query: 50 SLFGEILDWMLAPLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNGKVV 109 SL +++ W+L PL LL + Y A +A+ +DR+L S LA++VS V+G V Sbjct: 10 SLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDGHVT 69 Query: 110 ARLPVSARDLLRADDIDNIYYKVTGPNGEYVEGDVDMPQPPADEDR--ITLGTVQFRNDI 167 A +P A D D++ IYYKVTG NGE V G D+P P D R + V+F Sbjct: 70 ADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQAD 129 Query: 168 LHGSDVRIATLQVDLRRSAAQRAAQREPRIATVQVGETLEKRAQLANEIIKGVILPQFVI 227 H VRIA L + + + IA +QVGET+E R + +I+ + Q + Sbjct: 130 YHDQPVRIAALLQPVYDDSIRG-------IALIQVGETMEGRNGMTRKILFDTLWRQGTL 182 Query: 228 LPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDMLARL 287 + VA LVWFA+ L PL +L+ + +R P DLS D+ V +E+ PLV+++N + RL Sbjct: 183 VTVAALLVWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRL 242 Query: 288 SQTIAIQKRFIADAAHQMKTPLAGMRMQSELALR-----QDDQDDVRRSLEQLAKSSETA 342 I+ Q+RFIADA+HQ++TPL ++ QSEL LR Q D ++R +E +A++++ A Sbjct: 243 QALISAQRRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTDAA 302 Query: 343 TRLVNQLLSLARA 355 L N+LL+LARA Sbjct: 303 VHLANRLLTLARA 315 >gi|300314014|ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 152 bits (384), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 99/310 (31%), Positives = 168/310 (54%), Gaps = 13/310 (4%) Query: 48 QRSLFGEILDWMLAPLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNGK 107 +RS+ +L W+++P+ L + Y N +DR L SV + + NG+ Sbjct: 8 RRSVRAYLLAWIISPIALFIIIDSFSLYRNTLESVNTAYDRMLIASVHSIGDLLRIENGE 67 Query: 108 VVARLPVSARDLLRADDIDNIYYKVTGPNGEYVEGDVDMP--QPPADEDRITLGTVQFRN 165 + A LP +A ++ AD + Y++ G +G++ +GD D+P + AD++ I Sbjct: 68 LKASLPYAALEIYEADYSSRMIYRINGLDGKFFDGDADLPSYKGKADKEAIYPALAHIYE 127 Query: 166 DILHGSDVRIATLQVDLRRSAAQRAAQREPR-IATVQVGETLEKRAQLANEIIKGVILPQ 224 D +G VR+A L Q +PR A VQV ET+E R+ LA +I ++ Q Sbjct: 128 DTYNGVPVRVAAL--------FQPVVTNDPRGAALVQVAETMENRSALARKIFWETLIRQ 179 Query: 225 FVILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDML 284 +L V +++ + + R L P+ L++++ R DDLSP+ P E+ P + +LN ++ Sbjct: 180 AALLVVIVSVTLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAPRELQPFIDALNQLM 239 Query: 285 ARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQDDQDDVRRSLEQLAKSSETATR 344 ARL + + Q+RF+A+A+HQ++TPLA ++ Q + LR D V ++++ + E AT Sbjct: 240 ARLRRLLDHQQRFVANASHQLRTPLAVLKTQLQSGLRGDAPAPV--IWQEMSGTVERATT 297 Query: 345 LVNQLLSLAR 354 L NQLLSLA+ Sbjct: 298 LANQLLSLAK 307 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 148 bits (374), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 100/312 (32%), Positives = 160/312 (51%), Gaps = 19/312 (6%) Query: 47 IQRSLFGEILDWMLAPLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNG 106 + S+ ++L W++APLLL+ + +TY +A A FD+ L DS L QV Sbjct: 4 MHSSIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQE 63 Query: 107 KVVARLPVSARDLLRADDIDNIYYKVTGPNGEYVEGDVDMPQPPADE--DRITLGTVQFR 164 + A L A +LR++ D ++ V G+ V GD PQ PA + DR + + Sbjct: 64 RTTAELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPASDVFDR----PINYD 119 Query: 165 NDILHGSDVRIATLQVDLRRSAAQRAAQREPRIATVQVGETLEKRAQLANEIIKGVILPQ 224 + + G VRIA +QV ++ + V V ET+ KR + I+ ++ Sbjct: 120 GE-MRGEPVRIAAMQVRVKNG-----------VIWVAVAETIRKRDRAHYTILLSFLVLD 167 Query: 225 FVILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDML 284 + ++ +V A+ RGL PL LQ+ + R L ID P E+ PL+ ++N+++ Sbjct: 168 GALTFASIFVVLVAVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELM 227 Query: 285 ARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELAL-RQDDQDDVRRSLEQLAKSSETAT 343 AR+++ Q+ F+AD AHQ++TPL G+++Q EL + DQ D RSL + S E Sbjct: 228 ARINKGEQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMI 287 Query: 344 RLVNQLLSLARA 355 R QLL+LAR+ Sbjct: 288 RQSRQLLALARS 299 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/294 (31%), Positives = 153/294 (52%), Gaps = 11/294 (3%) Query: 62 PLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNGKVVARLPVSARDLLR 121 P+ + +S + Y A S A DRAL S ++A QV +G V +P +A +L Sbjct: 16 PMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDGAPVVSVPPAALELFA 75 Query: 122 ADDIDNIYYKVTGPNGEYVEGDVDMPQPPADEDRITLGTVQFRNDILHGSDVRIATLQVD 181 + D +YY+V + + G D P P D L V + +G +R+ + Sbjct: 76 SPAQDAVYYQVLMDDDTLLAGRPDFPAAP---DFAALYPV-YSTTSFNGKPLRVVSYIRA 131 Query: 182 LRRSAAQRAAQREPRIATVQVGETLEKRAQLANEIIKGVILPQFVILPVALALVWFALSR 241 L R + V VG+T++ R ++ ++ + Q V+L +A++LV L+ Sbjct: 132 LFDEGTLR-------MVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVLGLTM 184 Query: 242 GLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADA 301 L PL L+ + RRPD L+P+ +G + +E+ P+V ++N + RL+ + +QKRF+ADA Sbjct: 185 ELRPLLALKDELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRFVADA 244 Query: 302 AHQMKTPLAGMRMQSELALRQDDQDDVRRSLEQLAKSSETATRLVNQLLSLARA 355 AHQ++TPLA + Q + A + DD V + L L + S + T L N+LL L++A Sbjct: 245 AHQLRTPLAVIDSQIQFARQLDDPARVAQVLASLQEGSRSMTDLTNKLLLLSQA 298 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 909,491 Number of extensions: 34633 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 11 Length of query: 380 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 293 Effective length of database: 1,207,925 Effective search space: 353922025 Effective search space used: 353922025 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)