BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0024.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309977|ref|YP_003774069.1| transglutaminase/cysteine prote...   594   e-171
gi|300309975|ref|YP_003774067.1| transglutaminase-like superfami...    77   2e-15

>gi|300309977|ref|YP_003774069.1| transglutaminase/cysteine protease
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  594 bits (1531), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 283/311 (90%), Positives = 294/311 (94%)

Query: 1   MSERTVYRIHHQTSYQYSLPVRLSHQVLHLTPRELPWQQCLSHTVNILPAPQLVRSYEDN 60
           MS+R VYRIHHQT+YQY+LPVRLSHQVLHLTPRELPWQ CLSHTVNILP PQLVRSYEDN
Sbjct: 1   MSDRHVYRIHHQTTYQYALPVRLSHQVLHLTPRELPWQACLSHTVNILPQPQLVRSYEDN 60

Query: 61  FGNVIKAFSLDTDHTSLDVQADSWVALTPRAQPQPGMQWEEAATVMAYHGGRIMAPGMLE 120
           FGN+IKAFSLDTDHTSLDVQADSWVAL+ R QPQ  M W+EAA  MAYHGGR+M PGMLE
Sbjct: 61  FGNIIKAFSLDTDHTSLDVQADSWVALSARGQPQAQMAWDEAAMQMAYHGGRVMMPGMLE 120

Query: 121 ASNFLFESSHVRIKREFIRYAAECFSPGLSVVEGVRALMLRIHEEFAFDPAATTVSTPVT 180
           ASNFLFESSHVRIKREFIRYAAECF PG+SV+EGVR LMLRIHEEFAFDPAATTVSTPVT
Sbjct: 121 ASNFLFESSHVRIKREFIRYAAECFGPGVSVLEGVRTLMLRIHEEFAFDPAATTVSTPVT 180

Query: 181 EVFVNRRGVCQDFAHLMLSCLRSIGLAARYVSGYLLTEPPPGQPRLIGADASHAWVSVYC 240
           EVFVNRRGVCQDFAHLMLSCLRSIGLAARYVSGYLLTEPPPGQPRLIGADASHAWVSVYC
Sbjct: 181 EVFVNRRGVCQDFAHLMLSCLRSIGLAARYVSGYLLTEPPPGQPRLIGADASHAWVSVYC 240

Query: 241 PGADGGEGMWIDADPTNGVFPDTSHITLGWGRDFLDISPLRGVLIGGGQQTMQVAVTVLP 300
           PG +G EG WIDADPTNGVFPDTSHITLGWGRDFLDISPLRGVLIGGGQQ+MQVAVTVLP
Sbjct: 241 PGVNGAEGSWIDADPTNGVFPDTSHITLGWGRDFLDISPLRGVLIGGGQQSMQVAVTVLP 300

Query: 301 GEEAQGLQLSI 311
            EEAQGLQLSI
Sbjct: 301 AEEAQGLQLSI 311


>gi|300309975|ref|YP_003774067.1| transglutaminase-like superfamily
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1128

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 124/294 (42%), Gaps = 43/294 (14%)

Query: 9   IHHQTSYQYSLPVRLSHQVLHLTPRELPWQQCLSHTVNILPAPQLVRSYEDNFGNVIKAF 68
           ++H TSY+Y   + L  QV+ L P      + LS+++ +LP P  +   +D   N +   
Sbjct: 7   LNHVTSYKYDRAINLGPQVIRLRPAPHSRTRILSYSLRVLPEPHFINWQQDPESNYLARL 66

Query: 69  SLDTDHTSLDVQADSWVALT----------PRAQPQPGMQWEEAAT-VMAYHGGRIMAPG 117
                 T   ++ D    ++          P A+  P    E+    ++ Y     ++P 
Sbjct: 67  VFPEKTTEFKIEVDLVAEMSVINPFDFFLEPYAEQFPFDYAEDLQNELLPYRQKLPLSP- 125

Query: 118 MLEASNFLFESSHVRIKREFIRYAAECFSPGLSVVEGVRALMLRIHEEFAFDPAATTVST 177
                  LF      I RE +  A         +V   + L   I      +P    V T
Sbjct: 126 -------LFAQFLQSIPREKVGSAN-------FLVALNQKLANHIGYTIRMEPG---VQT 168

Query: 178 PVTEVFVNRRGVCQDFAHLMLSCLRSIGLAARYVSGYLLTEPPPGQPRLIG-----ADAS 232
           P  E    + G C+D + L++  LR +GLAAR+VSGYL+ +    Q  L G     AD +
Sbjct: 169 P-EETLELKSGSCRDSSWLLVQLLRHLGLAARFVSGYLI-QLTADQKSLDGPSGPEADFT 226

Query: 233 --HAWVSVYCPGADGGEGMWIDADPTNGVFPDTSHITLGWGRDFLDISPLRGVL 284
             HAW  VY PGA      W+  DPT+G+F    HI L    +    +P+ G++
Sbjct: 227 DLHAWCEVYLPGAG-----WVGLDPTSGLFAGEGHIPLSCTPEPASAAPVSGLV 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,109,406
Number of extensions: 49890
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)