BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0023.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641...   647   0.0  
gi|300309970|ref|YP_003774062.1| hypothetical protein Hsero_0635...    58   1e-09

>gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641
           [Herbaspirillum seropedicae SmR1]
          Length = 833

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/323 (96%), Positives = 320/323 (99%)

Query: 1   VDVSSHSGENLFWMGRYSERVKNLSRLLRTTLQYTMDGQTESRGMLGSVSWICSQLGVQM 60
           VDVSSHSGENLFWMGRYSERVKNL+RLLRTTLQYTMDGQTESRGMLGSVSWICSQLGVQM
Sbjct: 511 VDVSSHSGENLFWMGRYSERVKNLARLLRTTLQYTMDGQTESRGMLGSVSWICSQLGVQM 570

Query: 61  PKSEPRPTITGLQQSLQAAVVDPSVPVSVATQLRQLANAAYQVREHLSLDNWHALTKMPA 120
           PKS+PRPTITGLQQSLQAAVVDPS PVSVATQLRQLANAAYQVREHLSLDNWHALTKMPA
Sbjct: 571 PKSDPRPTITGLQQSLQAAVVDPSAPVSVATQLRQLANAAYQVREHLSLDNWHALTKMPA 630

Query: 121 MVQERINTPAAAQHVLGNVIDACSGLAGHALDDMTRDAGWQFLMVGRHIERMANMAALFD 180
           MVQERINTPAAAQHVLGNVIDACSGLAGHALDDMTRDAGWQFLMVGRHIERMANMAALFD
Sbjct: 631 MVQERINTPAAAQHVLGNVIDACSGLAGHALDDMTRDAGWQFLMVGRHIERMANMAALFD 690

Query: 181 NFLRLPPQRQTAALSWLLEAASSIVTYRVRYRRTPEWLPVLHLLVFDVSNPHGMAYQFRM 240
           NFLRLPPQRQTAALSWLLEAASSIVTYRVRYRRTPEWLPVLHLLVFDVSNPHGMAYQFRM
Sbjct: 691 NFLRLPPQRQTAALSWLLEAASSIVTYRVRYRRTPEWLPVLHLLVFDVSNPHGMAYQFRM 750

Query: 241 LQQYMAEIAQQLGLLSMTIPAHLTSQLEAMNLAEFAHDHPNVAEANARLTQLMRDAVSGG 300
           LQQYM+EIAQQLGLLSMTIP HL+SQLEAMNL+EFAH+HPNV +ANARLTQLMRDAVSGG
Sbjct: 751 LQQYMSEIAQQLGLLSMTIPTHLSSQLEAMNLSEFAHEHPNVEQANARLTQLMRDAVSGG 810

Query: 301 YMLSDDLSRHYFTPLTAPVSQGV 323
           YMLSDDLSRHYFTPLTAPVSQGV
Sbjct: 811 YMLSDDLSRHYFTPLTAPVSQGV 833


>gi|300309970|ref|YP_003774062.1| hypothetical protein Hsero_0635
           [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 17/185 (9%)

Query: 5   SHSGENLFWMGRYSERVKNLSRLL----RTTL--QYTMDGQTESRGMLGSVSWICSQLGV 58
           S + ++LFWM RY+ER +N +R+L    +T L  Q T D +   R +LG +S +      
Sbjct: 3   SRTADHLFWMARYTERAENTARMLDVHVQTALLPQSTDDAEQGWRAVLG-ISELLYGYNQ 61

Query: 59  QMPKSEPRPTITGLQQSLQAAVVDPSVPVSVATQLRQLANAAYQVREHLSLDNWHALTKM 118
           +  K   +  I  +       V DP+ P S+A+ LRQ    A  VR  L+ + W      
Sbjct: 62  KYDKLTQKDVIDFM-------VRDPNNPSSIASCLRQARENARAVRGALTTEAWEIQNAT 114

Query: 119 PAMVQERINTPAAAQH--VLGNVIDACSGLA-GHALDDMTRDAGWQFLMVGRHIERMANM 175
              +Q  + T A  Q+       +   S L+ G  +  M  D  + F+ +G  +ER  N 
Sbjct: 115 WIKMQSYLQTNALEQNPSDFFEWVKHRSHLSRGVTIGTMLEDEAFHFIRLGTFLERADNT 174

Query: 176 AALFD 180
           A + D
Sbjct: 175 ARIID 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.131    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 933,280
Number of extensions: 33814
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 2
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)