BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0014.0022.p (523 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641... 918 0.0 gi|300309971|ref|YP_003774063.1| hypothetical protein Hsero_0636... 255 6e-69 gi|300309731|ref|YP_003773823.1| 3-dehydroquinate dehydratase [H... 148 9e-37 >gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641 [Herbaspirillum seropedicae SmR1] Length = 833 Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/462 (96%), Positives = 453/462 (98%) Query: 1 MPQRLLESYPVASDRYDEMLAADGRLRPHWRTLIDQLENLSPEMLRRRANEVRDAIASDG 60 MPQRLLESYPVASDRYDEMLAADGRLRPHWRTLIDQLENLSP+MLRRRANEVRDAIASDG Sbjct: 1 MPQRLLESYPVASDRYDEMLAADGRLRPHWRTLIDQLENLSPDMLRRRANEVRDAIASDG 60 Query: 61 VTYNVYADPKGANRPWELDLLPHLVSSEQWDFLERAVAQRARLMNGLLADIYGPQHLIAE 120 VTYNVYADPKGANRPWELDLLPHLVSSE+WDFLERAV QRARLMNGLL+DIYGPQ LIAE Sbjct: 61 VTYNVYADPKGANRPWELDLLPHLVSSEEWDFLERAVGQRARLMNGLLSDIYGPQTLIAE 120 Query: 121 GLLPPALVFGQHGYLMPCHGWQPPGGVHLHAYAIDLARSADGTWWVVSDRTQGPSGTGYA 180 GLLPPALVFGQHGYLMPCHGWQPPGGVHLHAYAIDLARS DGTWWVVSDRTQGPSGTGYA Sbjct: 121 GLLPPALVFGQHGYLMPCHGWQPPGGVHLHAYAIDLARSVDGTWWVVSDRTQGPSGTGYA 180 Query: 181 LQNRQIMSRAMPEALRDMHVESPHRYFHTLRAMLTRLAPAQGEVPLIVLLTPGPYNETYS 240 LQNRQIM+RAMPEALRDMHVESPHRYFHTLRAMLTRLAPAQGEVPLIVLLTPGPYNETYS Sbjct: 181 LQNRQIMARAMPEALRDMHVESPHRYFHTLRAMLTRLAPAQGEVPLIVLLTPGPYNETYS 240 Query: 241 EHAFLAHTLGFPLVEGVDLTVRSDQVFLKTLNGLRRVHAILRRMDDDYCDPLELRADSAL 300 EHAFLAHTLGFPLVEGVDLTVR +QVFLKTLNGLRRVHAILRRMDDDYCDPLELRADSAL Sbjct: 241 EHAFLAHTLGFPLVEGVDLTVRGEQVFLKTLNGLRRVHAILRRMDDDYCDPLELRADSAL 300 Query: 301 GVPGLTQAARLGNVVIANSLGSGVLESTALHGFLPAINERLYGESLLLPSVASWWCGEKP 360 GVPGLTQAARLGNV+IANSLGSGVLESTALHGFLPAINERLYGE LLLPSVASWWCGEKP Sbjct: 301 GVPGLTQAARLGNVLIANSLGSGVLESTALHGFLPAINERLYGEPLLLPSVASWWCGEKP 360 Query: 361 ALDYTLAHLDELVIVPAFSSMRMQPVFGHTVTGTARRRLIESLQLQPHAYAAQEWVRLSQ 420 ALDYTLAH DELVIVPAFSSMRMQPVFGH+VTG ARRRLIESLQLQPHAYAAQEWVRLSQ Sbjct: 361 ALDYTLAHFDELVIVPAFSSMRMQPVFGHSVTGAARRRLIESLQLQPHAYAAQEWVRLSQ 420 Query: 421 APVMSRSGDYRLMNRTISLRVFAVADGEGGYQVMPGGLTHTS 462 APVMSRSGDYRLMNRTISLRVFAVADGEGGYQVMPGGLT + Sbjct: 421 APVMSRSGDYRLMNRTISLRVFAVADGEGGYQVMPGGLTRVA 462 >gi|300309971|ref|YP_003774063.1| hypothetical protein Hsero_0636 [Herbaspirillum seropedicae SmR1] Length = 475 Score = 255 bits (652), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 152/464 (32%), Positives = 240/464 (51%), Gaps = 24/464 (5%) Query: 16 YDEMLAAD-----GRLRPHWRTLIDQLENLSPEMLRRRANEVRDAIASDGVTYNVYADPK 70 +DEM + + ++R H+ + L S E + R+ E G+T+ VY + Sbjct: 5 FDEMYSGESHGNEAQVRQHYAEFANWLSAQSAETIARKRAESDLIFRRVGITFAVYGNDA 64 Query: 71 GANRPWELDLLPHLVSSEQWDFLERAVAQRARLMNGLLADIYGPQHLIAEGLLPPALVFG 130 G R D++P ++ +W LE + QR R +N + DIY Q ++ G++PP +F Sbjct: 65 GTERLIPFDIIPRIIHKAEWARLEAGLVQRVRALNMFIHDIYHEQKIVKAGIIPPEQIFQ 124 Query: 131 QHGYLMPCHGWQPPGGVHLHAYAIDLARSADGTWWVVSDRTQGPSGTGYALQNRQIMSRA 190 Y ++ H +D+ R+ +G ++V+ D + PSG Y L+NR++M R Sbjct: 125 NAQYRREMQDVNVVNDIYAHIAGVDIVRAGEGEFYVLEDNLRVPSGVSYMLENRKMMMRL 184 Query: 191 MPEALRDMHVESPHRYFHTLRAMLTRLAPAQGEVPLIVLLTPGPYNETYSEHAFLAHTLG 250 P+ + Y L L +APA P +V++TPG YN Y EHAFLA +G Sbjct: 185 FPDLFTRHKIAPVDHYPDLLLDNLRSVAPAGVTDPTVVVMTPGMYNSAYFEHAFLAQQMG 244 Query: 251 FPLVEGVDLTVRSDQVFLKTLNGLRRVHAILRRMDDDYCDPLELRADSALGVPGLTQAAR 310 LVEG DL V+ + V+++T G +RV I RR+DDD+ DPL R DSALGVPGL QA R Sbjct: 245 VELVEGQDLFVKDNVVYMRTTRGPKRVDVIYRRIDDDFLDPLAFRPDSALGVPGLLQAYR 304 Query: 311 LGNVVIANSLGSGVLESTALHGFLPAINERLYGESLLLPSVASWWCGEKPALDYTLAHLD 370 G V + N++G+GV + +++ ++P + E +L +V ++ C +K L YTLA+L+ Sbjct: 305 AGKVTLTNAIGTGVADDKSIYPYVPDMVRFYLSEDPILNNVPTYQCRKKEDLSYTLANLE 364 Query: 371 ELVIVPAFSSMRMQPVFGHTVTGTARRRLIESLQ----LQPHAYAAQEWVRLSQAPVMSR 426 +LV+ + +G V + R+ IE + +P Y AQ + LS P Sbjct: 365 KLVV----KEVHGAGGYGMLVGPASTRQEIEDFRARIIAKPDGYIAQPTLALSVCPTYVE 420 Query: 427 SGDYRLMNRTISLRVFAVADGEGGYQV--MPGGLTHTSVALRDA 468 SG + R + LR F ++ G Q+ + GGLT VAL++ Sbjct: 421 SG---IAPRHLDLRPFVLS----GKQITMVKGGLTR--VALKEG 455 >gi|300309731|ref|YP_003773823.1| 3-dehydroquinate dehydratase [Herbaspirillum seropedicae SmR1] Length = 145 Score = 148 bits (374), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 76/114 (66%), Positives = 89/114 (78%), Gaps = 6/114 (5%) Query: 412 AQEWVRLSQAPVMSRSGDYR--LMNRTISLRVFAVADGEGGYQVMPGGLTHTSVALRDAL 469 AQE R + A +++ ++ L++R R ++G G + PGGLTHTSVALRDAL Sbjct: 36 AQEQARAAGASLVAFQSNHEGALIDRIHQAR----SEGVDGIIINPGGLTHTSVALRDAL 91 Query: 470 AGVAIPFVELHISNVHQREEFRHFSYLSGIARAVLCGFGVDGYRMAVDFWLRQS 523 AGVAIPFVE+HISN+HQREEFRHFSYLSGIARAVLCGFGVDGYRMAVD WLRQS Sbjct: 92 AGVAIPFVEVHISNIHQREEFRHFSYLSGIARAVLCGFGVDGYRMAVDHWLRQS 145 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,825,810 Number of extensions: 82766 Number of successful extensions: 250 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 249 Number of HSP's successfully gapped: 3 Length of query: 523 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 433 Effective length of database: 1,193,720 Effective search space: 516880760 Effective search space used: 516880760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)