BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0014.0021.p (1134 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309975|ref|YP_003774067.1| transglutaminase-like superfami... 2190 0.0 gi|300309977|ref|YP_003774069.1| transglutaminase/cysteine prote... 73 1e-13 >gi|300309975|ref|YP_003774067.1| transglutaminase-like superfamily domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1128 Score = 2190 bits (5674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1065/1134 (93%), Positives = 1091/1134 (96%), Gaps = 6/1134 (0%) Query: 1 MSIHVALNHVTSYKYDRAINLGPQVIRLRPAPHSRTRILSYSLRVLPEPHFINWQQDPES 60 MSIHVALNHVTSYKYDRAINLGPQVIRLRPAPHSRTRILSYSLRVLPEPHFINWQQDPES Sbjct: 1 MSIHVALNHVTSYKYDRAINLGPQVIRLRPAPHSRTRILSYSLRVLPEPHFINWQQDPES 60 Query: 61 NYLARLVFPEKTTEFKIEIDLVAEMSVINPFDFFLEPYAEEFPFEYAKDLQNELMPYRQK 120 NYLARLVFPEKTTEFKIE+DLVAEMSVINPFDFFLEPYAE+FPF+YA+DLQNEL+PYRQK Sbjct: 61 NYLARLVFPEKTTEFKIEVDLVAEMSVINPFDFFLEPYAEQFPFDYAEDLQNELLPYRQK 120 Query: 121 LPLSPLFEKFLKSIPREKIGSANFLVALNQKLADHIGYTIRMEPGVQTPEETLQLKSGSC 180 LPLSPLF +FL+SIPREK+GSANFLVALNQKLA+HIGYTIRMEPGVQTPEETL+LKSGSC Sbjct: 121 LPLSPLFAQFLQSIPREKVGSANFLVALNQKLANHIGYTIRMEPGVQTPEETLELKSGSC 180 Query: 181 RDSSWLLVQLLRHLGLAARFVSGYLIQLTADQKSLDGPSGPEADFTDLHAWCEVYLPGAP 240 RDSSWLLVQLLRHLGLAARFVSGYLIQLTADQKSLDGPSGPEADFTDLHAWCEVYLPGA Sbjct: 181 RDSSWLLVQLLRHLGLAARFVSGYLIQLTADQKSLDGPSGPEADFTDLHAWCEVYLPGAG 240 Query: 241 TQGLDPTSGLFAGEGHIPLSCTPEPASAAPVSGLVDPCEVEFEHLMSVKRIWEAPRVTKP 300 GLDPTSGLFAGEGHIPLSCTPEPASAAPVSGLVDPCEVEFEHLMSVKRIWEAPRVTKP Sbjct: 241 WVGLDPTSGLFAGEGHIPLSCTPEPASAAPVSGLVDPCEVEFEHLMSVKRIWEAPRVTKP 300 Query: 301 YTEEQWAAIEKLGHAIDADLRANDVRLTMGGEPTFVSLDHPDEPEWNTAALGATKKPLAA 360 YTEEQWA IEKLGHAIDADL ANDVRLTMGGEPTFVSLDHPDEPEWNTAA+G TKKPLAA Sbjct: 301 YTEEQWADIEKLGHAIDADLHANDVRLTMGGEPTFVSLDHPDEPEWNTAAMGPTKKPLAA 360 Query: 361 ELYHRMRDKYAAQGLPHFGQGKWYPGEQLPRWALNCYWRRDGEPIWLNPELIGDETKPNV 420 ELYHRMR+KYAAQGLPHFGQGKWYPGEQLPRWALNCYWRRDGEPIWLNP LIGDET+PNV Sbjct: 361 ELYHRMRNKYAAQGLPHFGQGKWYPGEQLPRWALNCYWRRDGEPIWLNPALIGDETRPNV 420 Query: 421 SDKIVTSHFLHRVAQRLQVDGKNVFPAYEDVFYYMWRERRLPGNVDPFDSRVDDKQERER 480 SDKIVTSHFLHRVAQRL+VDGKNVFPAYEDVFYYMWRERRLPGNVDPFDSRVDDKQERER Sbjct: 421 SDKIVTSHFLHRVAQRLRVDGKNVFPAYEDVFYYMWRERRLPGNVDPFDSRVDDKQERER 480 Query: 481 LMKVFAQGLQSAVGHVLPLARRDDGRGWQSGAWFLRSERCYLYPGDSPLGYRLPLDSLPW 540 LMKVF QGLQSAVGHVLPLAR DG+GWQSGAWFLRSERCYLYPGDSPLGYRLPLDSLPW Sbjct: 481 LMKVFTQGLQSAVGHVLPLARSHDGQGWQSGAWFLRSERCYLYPGDSPLGYRLPLDSLPW 540 Query: 541 VKEGEAPVVYPADPTQAFRPLPSSAEIRRQLGSPQEPAALLKKAASSAAAIGGEGKAAAV 600 VKEGE P VYPADPTQAFRPLP SAEIRRQ+GSPQEP A L KA S AAA A+ + Sbjct: 541 VKEGEYPAVYPADPTQAFRPLPGSAEIRRQMGSPQEPLAGLGKAVSRAAAASSAATASTI 600 Query: 601 TTANAANTANAAATSSASQSAPAPFESANWLTRTALCAEVRNGVFYLFMPPLSQLEHYLE 660 + AN A S +Q PAPFESANWLTRTALCAEVRNGVFYLFMPPL+QLEHYLE Sbjct: 601 SDMGRANAA------SPTQPVPAPFESANWLTRTALCAEVRNGVFYLFMPPLAQLEHYLE 654 Query: 661 LVAAIEAVAEELKQPVLLEGYEPPHDPRLRKFSVTPDPGVIEVNIQPANNWSELVEQTTH 720 LVAAIEAVAEELKQPVLLEGYEPPHDPRLRKFSVTPDPGVIEVNIQPANNWSELVEQTTH Sbjct: 655 LVAAIEAVAEELKQPVLLEGYEPPHDPRLRKFSVTPDPGVIEVNIQPANNWSELVEQTTH 714 Query: 721 LYDAARASRLTTEKFMLDGHHSGTGGGNHMVLGGITTSDSPFLRRPDLLRSLISYWHNHP 780 LYDAARASRLTTEKFMLDGHHSGTGGGNHMVLGGITTSDSPFLRRPDLLRSLISYWHNHP Sbjct: 715 LYDAARASRLTTEKFMLDGHHSGTGGGNHMVLGGITTSDSPFLRRPDLLRSLISYWHNHP 774 Query: 781 SLSYLFSGMFIGPTSQAPRIDEARNDSTVEIELAFSEMDKQVAKGDCPPWLVDRLLRNLL 840 SLSYLFSGMFIGPTSQAPRIDEARNDSTVEIELAF+EMDKQVA+GDCPPWLVDRLLRNLL Sbjct: 775 SLSYLFSGMFIGPTSQAPRIDEARNDSTVEIELAFNEMDKQVARGDCPPWLVDRLLRNLL 834 Query: 841 IDVTGNTHRAEFCIDKMYSPDSATGRLGLLELRAFEMPPHARMSLTQQLLLRGLVARFWK 900 IDVTGNTHRAEFCIDKMYSPDSATGRLGLLELRAFEMPPHARMSLTQQLLLRGLVARFWK Sbjct: 835 IDVTGNTHRAEFCIDKMYSPDSATGRLGLLELRAFEMPPHARMSLTQQLLLRGLVARFWK 894 Query: 901 DPYKPARLVRWGTELHDRFLLPHFIEQDFADVMADMNEAGYPMRAEWFAPHMEFRCPKIG 960 PYKPARLVRWGTELHDRFLLPHFIEQDFADVMADMNEAGYPMRAEWFAPHMEFRCPKIG Sbjct: 895 QPYKPARLVRWGTELHDRFLLPHFIEQDFADVMADMNEAGYPMRAEWFAPHMEFRCPKIG 954 Query: 961 DYAVKGMQVELRTALEPWHVLGEENSGGGTARYVDSSLERLQVKISGMASDRYVLTCNGV 1020 DYAVKGMQ+ELRTALEPWHVLGEE+SGGGTARYVDSSLERLQVKISGMASDRYVLTCNGV Sbjct: 955 DYAVKGMQIELRTALEPWHVLGEESSGGGTARYVDSSLERLQVKISGMASDRYVLTCNGV 1014 Query: 1021 SVPLQPTGIVGQFVAGIRYRAWQPPSALHPTIPVDSPLTFDLVDTWNGRSLGGCQYHVVH 1080 SVPLQPTG VGQFVAG+RYRAWQPPSALHPTIPVDSPLTFDLVDTWNGRSLGGCQYHVVH Sbjct: 1015 SVPLQPTGTVGQFVAGVRYRAWQPPSALHPTIPVDSPLTFDLVDTWNGRSLGGCQYHVVH 1074 Query: 1081 PGGRNYETFPVNAFEAESRRLARYFRMNHTPGKWQVTPARASIEFPFTLDLRYF 1134 PGGRNYETFPVNAFEAESRRLARYFRMNHTPGK QVTPARASIEFPFTLDLRYF Sbjct: 1075 PGGRNYETFPVNAFEAESRRLARYFRMNHTPGKLQVTPARASIEFPFTLDLRYF 1128 >gi|300309977|ref|YP_003774069.1| transglutaminase/cysteine protease [Herbaspirillum seropedicae SmR1] Length = 311 Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 121/290 (41%), Gaps = 35/290 (12%) Query: 7 LNHVTSYKYDRAINLGPQVIRLRPAPHSRTRILSYSLRVLPEPHFINWQQDPESNYLARL 66 ++H T+Y+Y + L QV+ L P LS+++ +LP+P + +D N + Sbjct: 9 IHHQTTYQYALPVRLSHQVLHLTPRELPWQACLSHTVNILPQPQLVRSYEDNFGNIIKAF 68 Query: 67 VFPEKTTEFKIEIDLVAEMSVINPFDFFLEPYAE----EFPFEYAKDLQNELMPYRQKLP 122 T ++ D +S +P A+ E + A +MP + Sbjct: 69 SLDTDHTSLDVQADSWVALSARG------QPQAQMAWDEAAMQMAYHGGRVMMPGMLEAS 122 Query: 123 LSPLFEKFLKSIPREKI-------GSANFLVALNQKLADHIGYTIRMEPG---VQTP-EE 171 + LFE I RE I G ++ + L I +P V TP E Sbjct: 123 -NFLFESSHVRIKREFIRYAAECFGPGVSVLEGVRTLMLRIHEEFAFDPAATTVSTPVTE 181 Query: 172 TLQLKSGSCRDSSWLLVQLLRHLGLAARFVSGYLIQLTADQKSLDGPSGPEADFTDL-HA 230 + G C+D + L++ LR +GLAAR+VSGYL+ + P P D HA Sbjct: 182 VFVNRRGVCQDFAHLMLSCLRSIGLAARYVSGYLL-------TEPPPGQPRLIGADASHA 234 Query: 231 WCEVYLPGAP-TQG----LDPTSGLFAGEGHIPLSCTPEPASAAPVSGLV 275 W VY PG +G DPT+G+F HI L + +P+ G++ Sbjct: 235 WVSVYCPGVNGAEGSWIDADPTNGVFPDTSHITLGWGRDFLDISPLRGVL 284 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,819,534 Number of extensions: 173967 Number of successful extensions: 385 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 384 Number of HSP's successfully gapped: 2 Length of query: 1134 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1038 Effective length of database: 1,165,310 Effective search space: 1209591780 Effective search space used: 1209591780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)