BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0012.p
         (367 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309967|ref|YP_003774059.1| permease [Herbaspirillum serope...   441   e-125

>gi|300309967|ref|YP_003774059.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 360

 Score =  441 bits (1133), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 254/275 (92%), Positives = 266/275 (96%)

Query: 1   MPFSLSEEQKQNLAWLIVGILLLALLVALGPMLSPFVAAGIIGYALNPGVDWIASRRIGP 60
           MPFSLSEEQKQNL WLIVG LLLALL+ALGPMLSPFVAAGIIGYALNPGVDWIASRR+GP
Sbjct: 1   MPFSLSEEQKQNLVWLIVGFLLLALLIALGPMLSPFVAAGIIGYALNPGVDWIASRRLGP 60

Query: 61  LRIPRFVGVTIMVLLLILAGLALVLIVVPLVLRQIPLLQAQVPPLLDKLNAFLSPRLHQL 120
           +R+PRFV VTIMVLLLILAGLALVLIVVPLVLRQIPLLQAQVPPLLDKLNAF+SPRLHQL
Sbjct: 61  VRVPRFVAVTIMVLLLILAGLALVLIVVPLVLRQIPLLQAQVPPLLDKLNAFVSPRLHQL 120

Query: 121 GIDVRLDLAGIKALLTQQISTSGDELWSSVLASAKVGGTALLAWLANLLFVPMVLFYLLQ 180
           GIDVRLDLAGIK+LLTQQISTS DE+W+SVLASAKVGGTALL WLANLLFVPMVLFYLLQ
Sbjct: 121 GIDVRLDLAGIKSLLTQQISTSSDEVWTSVLASAKVGGTALLTWLANLLFVPMVLFYLLQ 180

Query: 181 DWHPFLKRLQFMIPRRWAGRVNTMATEVDSLLGQYLRGQLLVMLVLAVYYSVALTAAGFD 240
           DWH F+KR+Q +IPRRWAGR+NTMA EVD LLGQYLRGQLLVMLVLAVYYSVALTAAGFD
Sbjct: 181 DWHQFIKRMQILIPRRWAGRINTMAAEVDGLLGQYLRGQLLVMLVLAVYYSVALTAAGFD 240

Query: 241 SALPVGVLTGLLVFIPYVGFGLGLVLAILAAILQF 275
           SALPVGVLTGLLVFIPYVGFGLGLVLAILAAILQF
Sbjct: 241 SALPVGVLTGLLVFIPYVGFGLGLVLAILAAILQF 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.144    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 916,614
Number of extensions: 30984
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 2
Length of query: 367
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 280
Effective length of database: 1,207,925
Effective search space: 338219000
Effective search space used: 338219000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)