BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0009.p
         (537 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309964|ref|YP_003774056.1| tRNA nucleotidyltransferase/pol...   831   0.0  
gi|300313567|ref|YP_003777659.1| tRNA nucleotidyltransferase [He...    88   1e-18

>gi|300309964|ref|YP_003774056.1| tRNA
           nucleotidyltransferase/poly(A) polymerase
           [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score =  831 bits (2146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/459 (93%), Positives = 438/459 (95%), Gaps = 9/459 (1%)

Query: 1   MIKKLIRSILGRGKAAAAESAEPV----KKSRAKAXPGVKAAGGKIEPDVLGPKEHGIDP 56
           MIKKLIRSILGRGK AAA ++       +K+RAKA      A GKIEPDVLGPKEHGIDP
Sbjct: 1   MIKKLIRSILGRGKTAAAAASAEPPAPARKTRAKA-----GADGKIEPDVLGPKEHGIDP 55

Query: 57  ALVSPNAVRVTQTLQDAGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFI 116
           +LVSPNAVRVTQTLQ+AGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFI
Sbjct: 56  SLVSPNAVRVTQTLQEAGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFI 115

Query: 117 IGRRFQIVHVMFGQELIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINA 176
           IGRRFQIVHVMFGQELIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINA
Sbjct: 116 IGRRFQIVHVMFGQELIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINA 175

Query: 177 MYYDPASQAVLDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKLKFTIDPAS 236
           MYYDPASQAVLDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKLKFTIDPAS
Sbjct: 176 MYYDPASQAVLDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKLKFTIDPAS 235

Query: 237 SAPIRVMAPLIDNVPAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPL 296
           SAPIRVMAPLIDNVPAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPL
Sbjct: 236 SAPIRVMAPLIDNVPAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPL 295

Query: 297 GEKFVSLALANTDARVKEGKGVSPGFLFASLLWHQVLEKWRAYQAAGEYPIPALHLAADD 356
           GEKFV+LALA+TDARVK+GKGVSPGFLFASLLWHQVLEKWRAYQAAGEYPIPALHLAADD
Sbjct: 296 GEKFVTLALADTDARVKQGKGVSPGFLFASLLWHQVLEKWRAYQAAGEYPIPALHLAADD 355

Query: 357 VLDAQTEKLALQRKIASDMRDIWAMQPRFERRVGKAPYKLLEHLRLRAGFDFLLLRCQSG 416
           VLDAQTEKLALQRKIASDMRDIWAMQPRFERRVGKAPYKLLEHLRLRAGFDFLLLRCQSG
Sbjct: 356 VLDAQTEKLALQRKIASDMRDIWAMQPRFERRVGKAPYKLLEHLRLRAGFDFLLLRCQSG 415

Query: 417 ELDAELGEWWEAFIAGNGAEREELIARKPADPASSNAGP 455
           ELDAELGEWWEAFIAG GAEREELIARKPAD A   AGP
Sbjct: 416 ELDAELGEWWEAFIAGTGAEREELIARKPADAAGVAAGP 454


>gi|300313567|ref|YP_003777659.1| tRNA nucleotidyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 410

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 116/237 (48%), Gaps = 30/237 (12%)

Query: 76  KAFIVGGAVRDLLLGIKPKDFD-VATNATPEQVKQLFRRAFIIGRRFQI-VHVMFGQELI 133
           K + VGGAVRD LLG+  KD D V   ATPEQ+  L  R   +G+ F + +H    +E  
Sbjct: 2   KTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRP--VGKDFPVFLHPHTQEEYA 59

Query: 134 EVTT-------FRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDPASQAV 186
              T       ++G +  AAP         D T     +D  RRD TINA+  D     V
Sbjct: 60  LARTERKTAPGYKGFAFHAAP---------DVTL---EDDLARRDLTINAIAQDEDGTLV 107

Query: 187 LDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKL-KFTIDPASSAPIRVMAP 245
             YHG  ADI  +  R + +    + EDPVR+LRV RFAA+   FT+ P ++A ++ M  
Sbjct: 108 DPYHGR-ADIAARVFRHVSDA---FIEDPVRILRVARFAARFADFTVAPETNALMQRMVE 163

Query: 246 L--IDNVPAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKF 300
              +D +   RV+ E+ + LM        + LR  G    +LP LD +   P  EK+
Sbjct: 164 QGEVDALVPERVWQELSRGLMEQKPSRMFEVLRACGALQRILPELDALWGVPQPEKW 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,520,504
Number of extensions: 61615
Number of successful extensions: 242
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 2
Length of query: 537
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 447
Effective length of database: 1,193,720
Effective search space: 533592840
Effective search space used: 533592840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)