BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0004.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309960|ref|YP_003774052.1| chemotaxis protein methyltransf...   224   4e-60
gi|300311031|ref|YP_003775123.1| chemotaxis protein methyltransf...    79   4e-16
gi|300311336|ref|YP_003775428.1| chemotaxis protein methyltransf...    67   2e-12

>gi|300309960|ref|YP_003774052.1| chemotaxis protein
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  224 bits (572), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/148 (75%), Positives = 122/148 (82%)

Query: 55  APASGCADPEVSDHDMLLFQKLFKQDIGLHLPLSKKALLQSRLSHRLHELGLRGLGQYHR 114
            P     D EVSDHDMLLFQ+LFKQ IGLHLPLSKKALLQSRL+ RL+ELGLR LGQYH 
Sbjct: 3   GPHGIALDEEVSDHDMLLFQRLFKQQIGLHLPLSKKALLQSRLAGRLNELGLRHLGQYHA 62

Query: 115 LITSAEGAEERQRAIDLITTNETYFFREQGHFDFLTQDLLPRWRDREHLRVWSAASATGE 174
           LI+S  GA+ERQRAIDLITTNETYFFRE GHFDF+    LP+   +  LR+WSAASATGE
Sbjct: 63  LISSEAGAQERQRAIDLITTNETYFFREPGHFDFVVGQWLPQLAQQPQLRIWSAASATGE 122

Query: 175 EAYSLAMLLDHHRPAGSWSIFGSDISTR 202
           EAY+LAMLLDHHRP  SWS+F SDISTR
Sbjct: 123 EAYTLAMLLDHHRPGASWSVFASDISTR 150


>gi|300311031|ref|YP_003775123.1| chemotaxis protein
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score = 79.0 bits (193), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 7/144 (4%)

Query: 65  VSDHDMLLFQKLFKQDIGLHLPLSKKALLQSRLSHRLHELGLRGLGQYHRLITSAEGAEE 124
           +S+ D L F++ F +  G+    +K+  +  RL  R+   G      Y  L+      +E
Sbjct: 6   ISEADFLKFREYFYRKTGISFEATKRYFVDKRLIERIEATGSGSFRHYFSLLRFEADGKE 65

Query: 125 RQRAIDLITTNETYFFREQGHFDFLTQDLLPRW-RDREH---LRVWSAASATGEEAYSLA 180
            Q   +L+T NETYF RE+  F  L   +LP   R+R     +R+W    ++GEEAY+LA
Sbjct: 66  LQLLTNLMTVNETYFLREEYQFQCLVNSMLPEITRNRRSTAPIRIWCIPCSSGEEAYTLA 125

Query: 181 MLLDHHRPA-GSW--SIFGSDIST 201
           M L    P    W   I  SDI T
Sbjct: 126 MYLMERWPGIDQWDVEIISSDIDT 149


>gi|300311336|ref|YP_003775428.1| chemotaxis protein
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 4/135 (2%)

Query: 47  VTPVVAAIAPASGCADPEVSDHDMLLFQKLFKQDIGLHLPLSKKALLQSRLSHRLHELGL 106
           + P V +   +SG  + + +  D    + L  Q  G+ L  SK+ ++ SRL+ RL   G+
Sbjct: 1   MKPTVPSKGESSG-KEFDFNSRDFERVRGLIYQRAGIALADSKQEMVYSRLARRLRATGI 59

Query: 107 RGLGQYHRLITSAEGAEERQRAIDLITTNETYFFREQGHFDFLTQDLLPRWRDREHLRVW 166
               QY  ++     +EE +   + +TTN T FFRE  HF  L  D L     +E   +W
Sbjct: 60  TSFQQYLDMLERTHDSEEWEAFTNALTTNLTSFFREAHHFPILA-DFLKTL--KEPATIW 116

Query: 167 SAASATGEEAYSLAM 181
            +A++TGEE Y++AM
Sbjct: 117 CSAASTGEEPYTIAM 131


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 762,175
Number of extensions: 28802
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 3
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)