BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0014.0002.p (598 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra... 999 0.0 gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis dom... 382 e-107 gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis tra... 263 4e-71 gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II ... 232 5e-62 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 219 4e-58 >gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 999 bits (2582), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/599 (84%), Positives = 545/599 (90%), Gaps = 13/599 (2%) Query: 1 MSIKQIFIWLGVVLSILVAVVISLTDTLRQANTALEQAHQSRYDSAGLANELRRTTEDMT 60 MSIKQ+FIWL +VLSILVAVV+SLT L+ AN LE+AHQSRYDS LANELRRT EDMT Sbjct: 9 MSIKQLFIWLALVLSILVAVVVSLTGALKDANLELERAHQSRYDSTALANELRRTAEDMT 68 Query: 61 KFARAYVTTGDPNDEDRYYMILDIRNGKRARPSNYDRFNWDLVSARKLPVEAGAQTVPLS 120 KFARAYVTTGDPNDEDRYYMI+DIRNGKRARPSNYDRFNWDLV+ARKL ++ GA VPL Sbjct: 69 KFARAYVTTGDPNDEDRYYMIMDIRNGKRARPSNYDRFNWDLVNARKLALDPGAPGVPLG 128 Query: 121 ELMKRAGFTEQELAKMQEALKLGDQLSRIEITAFHAVKGEFDDGEGKFTVVGAPNQAMAQ 180 ELMKRAGFT++ELAKMQEALKLGDQL++IEITAFHAVKGEFDDGEGK+TV+GAPNQAMAQ Sbjct: 129 ELMKRAGFTDEELAKMQEALKLGDQLAKIEITAFHAVKGEFDDGEGKYTVIGAPNQAMAQ 188 Query: 181 ELVFDQTYRALFGRVMAPINDFLRQVDERTQARVLRAGREYAELEQKIFWLLTASVVVLF 240 ELVFDQTYR LFG++M+P+NDFLR VDERTQA V +AG++YAELEQKIFWLL ASVVVLF Sbjct: 189 ELVFDQTYRTLFGKLMSPVNDFLRLVDERTQANVRQAGKDYAELEQKIFWLLAASVVVLF 248 Query: 241 ACLGFAYRTIRSQIGGEPRDAMSVLRRVAEGDLTVIVPLRKNDKVSVLYSTQQMVNKWTD 300 ACL +YR IRSQIGGEPRDAMSVLRRVAEGDLTV+VPL K DK+SVLYSTQQM+NKWTD Sbjct: 249 ACLWLSYRIIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLPKGDKLSVLYSTQQMINKWTD 308 Query: 301 VIGDVSGTASALASASEEISSSSQALSHNASQQAANVEETSASVEEITATIAQNADNART 360 VIGDVSGTA++LASASE+ISSSSQALSHNA+QQAANVEETSASVEEITATIAQNADNART Sbjct: 309 VIGDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVEEITATIAQNADNART 368 Query: 361 TDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIEAARAGEH 420 TDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIEAARAGEH Sbjct: 369 TDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIEAARAGEH 428 Query: 421 GKGFAVVAAEVRKLAERSQTAAQEIIAVAENSVGLAEKAGGLLNQMVPSIRKTADLVQEI 480 GKGFAVVAAEVRKLAERSQ+AAQEIIAVAE SVGLAEKAGGLLNQMVPSIRKTADLVQEI Sbjct: 429 GKGFAVVAAEVRKLAERSQSAAQEIIAVAETSVGLAEKAGGLLNQMVPSIRKTADLVQEI 488 Query: 481 AAASAEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLMRFFRVDE 540 AAAS EQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLMRFF+V E Sbjct: 489 AAASHEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLMRFFQVGE 548 Query: 541 LQKPGVRGA-AGGVPESGGRRGRRAQSAAQGGRESTRRLSMLDVDEDAPGVDESSFKRF 598 +K R + A +P SGG+ +S RRLSMLD ED GVDESSFKRF Sbjct: 549 PRKNAPRASKAVPLPPSGGK------------SDSVRRLSMLDAPEDERGVDESSFKRF 595 >gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 568 Score = 382 bits (980), Expect = e-107, Method: Compositional matrix adjust. Identities = 226/554 (40%), Positives = 334/554 (60%), Gaps = 22/554 (3%) Query: 1 MSIKQIFIWLGVVLSILVAVVISLTDTLRQANTALEQAHQSRYDSAGLANELRRTTEDMT 60 SI+QIFI L V+++L+ +++ + + + L A++SRY S LA ELR++++D+T Sbjct: 9 FSIRQIFIMLTAVITVLMTLIVLAALAVDRYDARLNAANESRYASFLLATELRQSSDDLT 68 Query: 61 KFARAYVTTGDPNDEDRYYMILDIRNGKRARPSNYDRFNWDLVSAR-KLPVEAGAQTVPL 119 + AR YV TGDP+ E +Y ILDIRNGK+ARP +Y R WD V+A K P Q V L Sbjct: 69 RLARTYVVTGDPSYEQQYEAILDIRNGKKARPEHYGRIYWDFVAADGKAPRPDSNQHVAL 128 Query: 120 SELMKRAGFTEQELAKMQEALKLGDQLSRIEITAFHAVKGEFDDGEGKFTVVGAPNQAMA 179 ++LM+ AGFT E+ K++EA D L + E+ A + VKG + D +G FT P+ A A Sbjct: 129 TDLMRAAGFTAAEMGKLEEAKNNSDALVKTEVIAMNMVKGLYADAQGNFTKRADPDLAQA 188 Query: 180 QELVFDQTYRALFGRVMAPINDFLRQVDERTQARVLRAGREYAELEQKIFWLLTASVVVL 239 +EL+ + Y ++M P+++F +D RT +V + R A +F+ L A +V+ Sbjct: 189 RELMHNHAYHVYKAKIMRPVDEFFALLDARTTEQV-ESARAQATHMATLFYSLIAIALVV 247 Query: 240 FAC-LGFAYRTIRSQIGGEPRDAMSVLRRVAEGDLTV-IVPLRKNDKVSVLYSTQQMVNK 297 AC L Y IR+ + A SV RRVA GDLT I P K + +L + M + Sbjct: 248 LACTLMLVYHAIRNPLA----HAASVARRVAHGDLTAQIDPAIKGETGELLEALTIMQSG 303 Query: 298 WTDVIGDVSGTASALASASEEISSSSQALSHNASQQAANVEETSASVEEITATIAQNADN 357 ++ DV A + +++ EI+S + LS QQA+++EET++S+EE+T+T+ QNA N Sbjct: 304 LQTIVLDVRNGAQYINTSANEIASGTLDLSSRTEQQASSLEETASSMEELTSTVKQNAGN 363 Query: 358 ARTTDGIASLSASAATEGGEAVRETVAAM-------KQIASKIGIIDDIAYQTNLLALNA 410 AR +A+ ++ A GGE V V M K+I I +ID IA+QTN+LALNA Sbjct: 364 ARLASELANTASGVAVRGGEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQTNILALNA 423 Query: 411 AIEAARAGEHGKGFAVVAAEVRKLAERSQTAAQEIIAVAENSVG-------LAEKAGGLL 463 A+EAARAGE G+GFAVVA EVR LA+RS AA+EI + +NSV L +AG + Sbjct: 424 AVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKTLIDNSVSKVEAGSTLVNEAGSTM 483 Query: 464 NQMVPSIRKTADLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMS 523 ++V S+++ +++ I+ AS EQ++G+EQI A++QM Q TQ A+ E+ SA SE M Sbjct: 484 REVVESVQRVTEIITGISNASQEQASGIEQIQQAINQMDQVTQQNAALVEQASAASESMQ 543 Query: 524 AQAIHLQDLMRFFR 537 QA L DL+ F+ Sbjct: 544 MQAHKLTDLVGAFK 557 >gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 263 bits (671), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 147/304 (48%), Positives = 213/304 (70%), Gaps = 3/304 (0%) Query: 238 VLFACLGFAY---RTIRSQIGGEPRDAMSVLRRVAEGDLTVIVPLRKNDKVSVLYSTQQM 294 VL LG + RT+ Q+GGEP D ++V++R+++GDL + L+ + S++++ Q+M Sbjct: 203 VLLILLGAGWLLTRTLLRQMGGEPGDVVTVMQRLSDGDLVQTITLKPGCRDSMMHAIQKM 262 Query: 295 VNKWTDVIGDVSGTASALASASEEISSSSQALSHNASQQAANVEETSASVEEITATIAQN 354 + + V+G+V G A L S +EE+S+++Q+LS +++QA VE+TS ++ +I A + Sbjct: 263 MTRLAQVVGEVRGNADGLVSTAEEVSATAQSLSRASTEQANGVEQTSEALAQIHALLQST 322 Query: 355 ADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIEA 414 A NAR TD IA+ +A A + E V++ VAA++QIA KI +IDDIAYQTNLLALNA IEA Sbjct: 323 AQNARLTDQIAAAAALEARQCAETVKQMVAAIQQIAGKIAVIDDIAYQTNLLALNATIEA 382 Query: 415 ARAGEHGKGFAVVAAEVRKLAERSQTAAQEIIAVAENSVGLAEKAGGLLNQMVPSIRKTA 474 A AGEHG GFAVVAAEVR+LAERSQ+AAQEI VA +V LA A L+ MVP+I +T+ Sbjct: 383 AHAGEHGSGFAVVAAEVRRLAERSQSAAQEIDEVARANVTLACAAERQLSDMVPTITRTS 442 Query: 475 DLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLMR 534 LVQ+I +S +QST + QI+ A Q+AQ Q + +SEEL+ TSEE++ +A+ LQ + Sbjct: 443 VLVQDIVQSSEQQSTAVSQISTAASQLAQVIQQNSLSSEELAVTSEELNRRALLLQTAVG 502 Query: 535 FFRV 538 FF+ Sbjct: 503 FFQC 506 >gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 232 bits (592), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 138/304 (45%), Positives = 208/304 (68%), Gaps = 3/304 (0%) Query: 250 IRSQIGGEPRDAMSVLRRVAEGDLTVIVPLRKNDKVSVLYSTQQMVNKWTDVIGDVSGTA 309 +R ++GGEP A ++R++A+G+L V V LR ND+ S+LY+ M + T+++ +V+ + Sbjct: 238 VRRELGGEPAYAADIVRQIADGNLCVEVNLRSNDRSSLLYAMHTMRARLTEIMRNVTLST 297 Query: 310 SALASASEEISSSSQALSHNASQQAANVEETSASVEEITATIAQNADNARTTDGIASLSA 369 AL +S ++++++ AL+ +S+QAA VEE ++ + I Q ++AR T+ IA +A Sbjct: 298 QALGVSSRQLNATAHALAQASSEQAAAVEEVHGAIASMNQAIQQTGEHARRTNQIAVAAA 357 Query: 370 SAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAA 429 S A + G AV+ TV AM+ IA ++G+IDDIAYQTNLLALNAAIEAARAGEHG+GF+VVAA Sbjct: 358 SDADKSGAAVQTTVDAMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAA 417 Query: 430 EVRKLAERSQTAAQEIIAVAENSVGLAEKAGG-LLNQMVPSIRKTADLVQEIAAASAEQS 488 EVRKLAERSQ++A EI +A+ SV LAE+ L+ + IR+ + + +I +S Q Sbjct: 418 EVRKLAERSQSSAHEISVIAQQSVELAEQTSQRLVEGTLQGIRQASQQINQITLSSRMQE 477 Query: 489 TGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLMRFFRVDELQ--KPGV 546 G+ +I AV Q+ TTQ A+ASEEL+ T+E M+ +A L + +FR+++ Q +PG Sbjct: 478 EGVAEIGVAVTQLNDTTQRNAAASEELAITAEAMAERARELNAQLAYFRLEQSQQGQPGQ 537 Query: 547 RGAA 550 R AA Sbjct: 538 RPAA 541 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 219 bits (558), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 133/332 (40%), Positives = 209/332 (62%), Gaps = 16/332 (4%) Query: 230 WLLTASVVVLFACLGF-AYRTIRSQIGGEPRDAMSVLRRVAEGDLTVIVPLRKNDKVSVL 288 W L A V+L F R++ Q+GGEP A + ++A+G+L V +PL K D+ S++ Sbjct: 194 WTLVAGSVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGNLAVSIPLAKGDQHSLM 253 Query: 289 YSTQQMVNKWTDVIGDVSGTASALASASEEISSSSQALSHNASQQAANVEETSASVEEIT 348 S + M + T ++ + +A ++++A+ +I+ + LS +QAA++EET++S+EEIT Sbjct: 254 ASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQAASLEETASSMEEIT 313 Query: 349 ATIAQNADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASK-------IGIIDDIAY 401 +T+ QN NA +A ++ A +GGE V V MK I+ I ++ IA+ Sbjct: 314 STVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSAYKITEIIATVEGIAF 373 Query: 402 QTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQTAAQEIIAVAENSV-------G 454 QTN+LALNAA+EAARAGE G+GFAVVA EVR LA+RS ++A+EI + E+SV Sbjct: 374 QTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIRGLIESSVQHVEAGQK 433 Query: 455 LAEKAGGLLNQMVPSIRKTADLVQEIAAASAEQSTGLEQINNAVHQMAQTTQMTASASEE 514 L ++AG ++++V SI++ DL+ EI AAS EQS+G+ QIN A+ QM + TQ A+ EE Sbjct: 434 LVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQMDEVTQQNAALVEE 493 Query: 515 LSATSEEMSAQAIHLQDLMRFFRVDELQKPGV 546 ++ ++ M+ QA L+D + FR+++ Q P V Sbjct: 494 SASAAQSMAQQANSLRDAVAVFRIEQPQ-PAV 524 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.127 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,426,472 Number of extensions: 50558 Number of successful extensions: 608 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 306 Number of HSP's successfully gapped: 70 Length of query: 598 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 507 Effective length of database: 1,188,985 Effective search space: 602815395 Effective search space used: 602815395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)