BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0022.p (222 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312111|ref|YP_003776203.1| LysR family transcription regul... 421 e-119 gi|300312305|ref|YP_003776397.1| LysR family transcription regul... 189 1e-49 gi|300309393|ref|YP_003773485.1| LysR family transcription regul... 83 2e-17 gi|300312750|ref|YP_003776842.1| LysR family transcription regul... 79 2e-16 gi|300311542|ref|YP_003775634.1| LysR family transcription regul... 79 2e-16 >gi|300312111|ref|YP_003776203.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 421 bits (1081), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/221 (93%), Positives = 213/221 (96%) Query: 1 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELETRFGTRLLYRESKGVQLT 60 MLFDLTDLRLFILIAE NSLTRSAERMNLSL ATSNRIKELETRFGTRLLYRESKGVQLT Sbjct: 1 MLFDLTDLRLFILIAEHNSLTRSAERMNLSLGATSNRIKELETRFGTRLLYRESKGVQLT 60 Query: 61 PAGHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 PAGHTLLHHAQ FMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP Sbjct: 61 PAGHTLLHHAQQFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 Query: 121 QVNVSLEERLNHDILRGIQEGTADIGIVAGPVQGDGLQVLNFSTDRLVLATALEHPLAGA 180 QVNV+LEERLNHDILRGIQEGTADIGIVAGPVQG+GLQ+LNFSTDRLVLATALEHPLA A Sbjct: 121 QVNVALEERLNHDILRGIQEGTADIGIVAGPVQGEGLQILNFSTDRLVLATALEHPLADA 180 Query: 181 GSVPFQDTLEYEHIGLHEGSTLHHFLNKIVSEQGQRLKLRI 221 S+PF TLEYEHIGLHEGSTLHHFL+KIV+E GQRLKLRI Sbjct: 181 PSLPFIQTLEYEHIGLHEGSTLHHFLSKIVAENGQRLKLRI 221 >gi|300312305|ref|YP_003776397.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 189 bits (480), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 92/219 (42%), Positives = 141/219 (64%) Query: 3 FDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELETRFGTRLLYRESKGVQLTPA 62 F+L+DLRLF+ I E S+T A+R +++LA+ S RI+ +E GT LL R +GVQ T A Sbjct: 5 FELSDLRLFLHIVESGSITGGAQRAHMALASASARIRNMEDALGTPLLERGRRGVQTTDA 64 Query: 63 GHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHPQV 122 G L HHA++ QQ+E L+ ++ QY G+KG+IR+ NT+A+TEF+PE+L +FLARHP Sbjct: 65 GRALAHHARMMAQQMEQLRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLARHPHT 124 Query: 123 NVSLEERLNHDILRGIQEGTADIGIVAGPVQGDGLQVLNFSTDRLVLATALEHPLAGAGS 182 ++ LEE+L++++++ + +G AD+GI+A LQ F D LV + HPLA S Sbjct: 125 DIELEEKLSYEVVQAVIDGVADVGIIADSTDSGPLQTYPFRQDHLVAVLSKRHPLARRKS 184 Query: 183 VPFQDTLEYEHIGLHEGSTLHHFLNKIVSEQGQRLKLRI 221 + F + L + +GL S L L+ + G+RL+ R+ Sbjct: 185 LAFAELLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRV 223 >gi|300309393|ref|YP_003773485.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 10/191 (5%) Query: 3 FDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELETRFGTRLLYRESKGVQLTPA 62 +L LR F+ +AE S TR+AE++ + S +IK LE G L R S+GV+L+ Sbjct: 1 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIKALEEEVGGALFLRSSQGVELSEV 60 Query: 63 GHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEI---LGKFLARH 119 G LL HAQ + Q E +Q +G G +R+ ++AV F P + L +F RH Sbjct: 61 GRVLLPHAQRAVDQAEQALRAARQAASGETGLLRMGFTSSAV--FHPLVSHALQQFRERH 118 Query: 120 PQVNVSLEERLNHDILRGIQEGTAD---IGIVAGPVQGDGLQVLNFSTDRLVLATALEHP 176 ++ +SL E + +L I D + IV P L V+ ++L +A HP Sbjct: 119 RKLEISLSEGITEQLLADIAASQLDAAFVRIVTTP--SAALGVVELPAEKLKVALPRSHP 176 Query: 177 LAGAGSVPFQD 187 LA S+ QD Sbjct: 177 LARRKSLRLQD 187 >gi|300312750|ref|YP_003776842.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 79.3 bits (194), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 94/182 (51%), Gaps = 4/182 (2%) Query: 3 FDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELETRFGTRLLYRESKGVQLTPA 62 DL LR FI +AE LT++AER+ + S +I+ LE G L R +G++LT + Sbjct: 19 IDLRLLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRVLERELGVTLFNRLPRGMELTDS 78 Query: 63 GHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRI-FANTTAVTEFMPEILGKFLARHPQ 121 G LL A+ + Q++ + +++ G G I + F + ++ F+ ++ F A P Sbjct: 79 GAALLIDARALLAQLDTTVASVRRIAQGKMGRIAVGFTESASLHPFVHSVIRAFRADAPD 138 Query: 122 VNVSLEERLNHDILRGIQEGTADIGIVAGPVQGD--GLQVLNFSTDRLVLATALEHPLAG 179 V +++EE ++++ ++ D+ V PV GD GL + + +V A ++HPL Sbjct: 139 VAMTVEESNTNELIEALRGKRLDLAFVRSPV-GDSGGLTIETMLEEDMVAALPIDHPLVD 197 Query: 180 AG 181 G Sbjct: 198 GG 199 >gi|300311542|ref|YP_003775634.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 79.3 bits (194), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 10/212 (4%) Query: 8 LRLFILIAELNSLTRSAERMNLSLAATSNRIKELETRFGTRLLYRESKGVQLTPAGHTLL 67 L+ F+ +A+ +A+R ++S +A S I+++E G RL R+++ V LTP G + Sbjct: 10 LQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVTLTPEGELFV 69 Query: 68 HHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHPQVNVSLE 127 A+ + +E SDM Y KG + I A + ++P +L + R+P V V L Sbjct: 70 QVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQRYPGVTVELF 129 Query: 128 ERLNHDILRGIQEGTADIGIVAGPVQGDGLQVLNFST-----DRLVLATALEHPLAGAGS 182 + ++ L ++ G DI + A G +L F T D L +H LA Sbjct: 130 DAISDQCLDLLRHGKVDIALTA-----PGPNLLEFDTRPLCSDPFYLVCRKDHKLASKRR 184 Query: 183 VPFQDTLEYEHIGLHEGSTLHHFLNKIVSEQG 214 + E I L +++ L+ ++ G Sbjct: 185 IKVPQLAGCEMIHLARSTSVRQHLDAVLRPGG 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 649,527 Number of extensions: 26766 Number of successful extensions: 185 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 178 Number of HSP's successfully gapped: 62 Length of query: 222 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 140 Effective length of database: 1,231,600 Effective search space: 172424000 Effective search space used: 172424000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)