BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0019.p (396 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine... 711 0.0 gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine... 163 3e-41 gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine... 72 9e-14 >gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 399 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/399 (88%), Positives = 373/399 (93%), Gaps = 3/399 (0%) Query: 1 MSHANRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDTRVNGLSS 60 MS ++RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYD+RVNGLSS Sbjct: 1 MSPSHRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSS 60 Query: 61 HFVWTNRSKESLTLNLKDEEGKRIIGQLLGEADVLVQNLAPGAAAGLGLSAKTLHAKHPG 120 HFVWTNRSKESLTLNLKDEEG+RII QLL +ADVLVQNLAPGAAAGLGLSA+ LHA+HP Sbjct: 61 HFVWTNRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALHARHPR 120 Query: 121 LIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDEVVKAGCSIADIAAGMYAYSN 180 LIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPD+VVKAGCSIADIAAGMYAYSN Sbjct: 121 LIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDDVVKAGCSIADIAAGMYAYSN 180 Query: 181 ILAALIKRGRDGRG---SHIDLSMLEALTEWMSFPLYYAYQGASAPGRSGAEHATIYPYG 237 ILAALIKRGR+GR SHIDLSMLE+L EWMSFPLYYAYQGASAP RSGAEHATIYPYG Sbjct: 181 ILAALIKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGASAPLRSGAEHATIYPYG 240 Query: 238 PFKAGDGKTVMLGLQNEREWKVFCEVVLQDAALAIDERFSSNARRHEHREALRQRILGMF 297 PF AGDGKTVMLGLQNEREWKVFCE VLQDAALA D RFSSNARRHEHR+ LRQ IL +F Sbjct: 241 PFSAGDGKTVMLGLQNEREWKVFCEQVLQDAALASDARFSSNARRHEHRDVLRQLILDVF 300 Query: 298 ADMSAEQVVARLDQAQIANARVNTMQELWQHPQLAARERWTEVDTPAGKVAALLPPGAND 357 A +SAEQV ARLD+AQIANARVNTMQELWQHPQLAAR+RWTEV TP GKVAALLPPGAND Sbjct: 301 AGLSAEQVAARLDEAQIANARVNTMQELWQHPQLAARQRWTEVATPVGKVAALLPPGAND 360 Query: 358 SFDYRMEAIPALGQHTEAILARLGYDAAAITALRERGAV 396 S+DYRMEAIPALGQHTE+IL+ LGY+A I ALRERGAV Sbjct: 361 SYDYRMEAIPALGQHTESILSALGYEAGQIAALRERGAV 399 >gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 415 Score = 163 bits (412), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 121/408 (29%), Positives = 195/408 (47%), Gaps = 20/408 (4%) Query: 7 PLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDTRVNGLSSHFVWTN 66 PL GI V+ L IA PFC+R LA+ GA VIK+E PG GD R + +G S + Sbjct: 10 PLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDGTSLWWSVQA 69 Query: 67 RSKESLTLNLKDEEGKRIIGQLLGEADVLVQNLAPGAAAGLGLSAKTLHAKHPGLIVCDI 126 R+K+S+TLN+KDE + I +L EADV+++N PG L + L +P I+ + Sbjct: 70 RNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATIMVRL 129 Query: 127 SGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDE-VVKAGCSIADIAAGMYAYSNILAAL 185 SGYG+ GP RD + + +S G V+G PD V+ G SI D A ++ + AL Sbjct: 130 SGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGAMMAL 189 Query: 186 I-----------KRGRD---GRGSHIDLSMLEALTEWM-SFPLYYAYQGASAPGRSGAEH 230 K+G D G+G +D+++ EA+ M S + + G R+G Sbjct: 190 RHRDVTGGRWNGKQGADCVAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRE-RTGGAL 248 Query: 231 ATIYPYGPFKAGDGKTVMLGLQNEREWKVFCEVVLQDAALAIDERFSSNARRHEHREALR 290 I P + G+G +++ + +K + ++ +A D + N R E + Sbjct: 249 PGIVPSNTYTTGEGMNIVIAGNGDAIFKRLMSAIGRE-DMANDPGLARNDGRVPRTEEID 307 Query: 291 QRILGMFADMSAEQVVARLDQAQIANARVNTMQELWQHPQLAARERWTEVDTPAGKVAAL 350 I + + E +A L A + ++ +++++ Q AR+ + + G L Sbjct: 308 AAIQQWCSTQTIETALATLQAADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKL 367 Query: 351 --LPPGANDSFDYRMEAIPALGQHTEAILARLGYDAAAITALRERGAV 396 + P +++ P LG H++ IL LGYD A I LR++G V Sbjct: 368 PGITPKMSETPGQTKWLGPELGAHSDEILQSLGYDEAHIKMLRDQGVV 415 >gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 469 Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 12/147 (8%) Query: 5 NRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDTRVNGLSSHFVW 64 +RPL GI V+ L +A P TR LA LGA V++I+ G + N + + Sbjct: 205 DRPLRGIRVLDLTRILAGPVATRFLAGLGAEVLRIDPYGWEE--------PNTVPEVVL- 255 Query: 65 TNRSKESLTLNLKDEEGKRIIGQLLGEADVLVQNLAPGAAAGLGLSAKTLHAKHPGLIVC 124 K LNLKD + +L+G AD+LV A A LGL A +P LI Sbjct: 256 ---GKRCARLNLKDPADLDTLRRLMGHADILVHGYRSDALAKLGLDAAQRRELNPALIDV 312 Query: 125 DISGYGEDGPYRDKKAYDLLIQSEAGF 151 + YG G ++ ++ +D LIQ G Sbjct: 313 SLDAYGWSGAWQCRRGFDSLIQMSTGI 339 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,299,338 Number of extensions: 55593 Number of successful extensions: 177 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 3 Length of query: 396 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 309 Effective length of database: 1,207,925 Effective search space: 373248825 Effective search space used: 373248825 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)