BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0018.p
         (279 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312107|ref|YP_003776199.1| citrate lyase beta subunit [Her...   415   e-117

>gi|300312107|ref|YP_003776199.1| citrate lyase beta subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  415 bits (1067), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/273 (78%), Positives = 235/273 (86%), Gaps = 3/273 (1%)

Query: 8   ASSYLFVPANRPERYAKALESGADAVIVDLEDAVALPQKEEARATLARWL---RGNGPQP 64
           ASSYLFVPANRPERYAKAL+SGADAVIVDLEDAVA P KE AR TLARWL    G   Q 
Sbjct: 3   ASSYLFVPANRPERYAKALDSGADAVIVDLEDAVARPYKEAARETLARWLAGPEGQASQA 62

Query: 65  RLWVRINAADTVWHGDDLLTFSALSMAGIVLPKAEEAKTLSSIARRLGPGRGLIALIESA 124
           RLWVRINAADTVWH  DLLTFSAL +AGIVLPKAE+A  + ++A  L  G GLIALIESA
Sbjct: 63  RLWVRINAADTVWHEQDLLTFSALPVAGIVLPKAEDAAGVGAVAGALRSGSGLIALIESA 122

Query: 125 AGLAAMREIAAVPGVQRLAFGSIDAQVDLGMQCGPEEEELMHFRMEMVMASRLAGIAPPI 184
           AGLAAMR+IAA PGVQRLAFGSIDAQ+DLGMQCGPEEEEL+  R+EMV+ASRLAGIA P+
Sbjct: 123 AGLAAMRQIAAAPGVQRLAFGSIDAQLDLGMQCGPEEEELLSLRVEMVLASRLAGIAAPV 182

Query: 185 DGVTTDFNDDAFLARMVQRARRMGFGAKLCIHPKQVEGVRRGFMPGEQELAWAEEVMAAV 244
           DGVT  F+D+A L R V+RARR+GFGAKLCIHP+QVE VRRGF+P EQELAWA EVMAAV
Sbjct: 183 DGVTAGFDDEALLVRGVERARRLGFGAKLCIHPRQVEVVRRGFLPSEQELAWAAEVMAAV 242

Query: 245 RASDGGAISLKGKMIDKPVILQAEKFLHQAGRL 277
           RASDGGAISLKG+MID+P+ILQAEKFL Q G L
Sbjct: 243 RASDGGAISLKGRMIDRPLILQAEKFLRQVGAL 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 918,820
Number of extensions: 38780
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,222,130
Effective search space: 238315350
Effective search space used: 238315350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)