BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0014.p
         (121 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309508|ref|YP_003773600.1| dinucleotide-utilizing enzyme p...   213   3e-57
gi|300310571|ref|YP_003774663.1| transmembrane protein [Herbaspi...    53   9e-09

>gi|300309508|ref|YP_003773600.1| dinucleotide-utilizing enzyme
           protein [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  213 bits (543), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/112 (94%), Positives = 109/112 (97%)

Query: 1   MDDQQLLRYSRHILLDEIDIEGQTRLLQGHALVIGAGGLGSPAAMYLASAGVGHITLVDH 60
           MDDQQLLRYSRHILLDEIDI+GQTRLLQGHALVIGAGGLGSPAAMYLASAGVG ITLVDH
Sbjct: 1   MDDQQLLRYSRHILLDEIDIDGQTRLLQGHALVIGAGGLGSPAAMYLASAGVGRITLVDH 60

Query: 61  DTVDLTNLQRQIMHTTARVGQPKVASGREALQQINPGVQVTALAERVEGERL 112
           DTVDLTNLQRQIMHTTARVGQPKV SGR+AL+QINPGVQVTALAERVE ERL
Sbjct: 61  DTVDLTNLQRQIMHTTARVGQPKVESGRQALEQINPGVQVTALAERVEAERL 112


>gi|300310571|ref|YP_003774663.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 285

 Score = 52.8 bits (125), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 47  LASAGVGHITLVDHDTVDLTNLQRQIMHTTARVGQPKVASGREALQQINPGVQVTALAER 106
           LA + +GH+TLVD D +  +N+ RQI   T  +GQ KV +  E ++QINP   VT + + 
Sbjct: 52  LARSAIGHLTLVDLDNLAESNVNRQIHALTTTLGQAKVTALHERIRQINPTCVVTEVEDF 111

Query: 107 VEG---ERLGGGGR 117
           V+    E++ GG R
Sbjct: 112 VDPDNVEKMLGGER 125


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 347,827
Number of extensions: 13846
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 2
Length of query: 121
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 47
Effective length of database: 1,269,480
Effective search space: 59665560
Effective search space used: 59665560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)