BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0011.p
         (104 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309511|ref|YP_003773603.1| hypothetical protein Hsero_0169...   123   3e-30

>gi|300309511|ref|YP_003773603.1| hypothetical protein Hsero_0169
           [Herbaspirillum seropedicae SmR1]
          Length = 142

 Score =  123 bits (309), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 72/102 (70%), Gaps = 6/102 (5%)

Query: 9   SPKEDGDLISEALFDEGE------EAHAELAAADGHDAHHHHAHGLHHSCVAYDAAALSA 62
           +P     LIS+ALFDEGE       AH       G D  H HA   HHSCV+YDAAALSA
Sbjct: 41  APGTVHSLISDALFDEGEGDDHAASAHVHGGQQQGEDHAHVHADHSHHSCVSYDAAALSA 100

Query: 63  GVHVDFPPLPLLPPVRVLALWLAFASWDAPLNCHFSSRAPPR 104
           G H DFPPLPL+PPVRVLALW AFASWD PLNCHFSSRAPPR
Sbjct: 101 GAHFDFPPLPLMPPVRVLALWQAFASWDPPLNCHFSSRAPPR 142


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 194,561
Number of extensions: 2903
Number of successful extensions: 16
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 104
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 33
Effective length of database: 1,283,685
Effective search space: 42361605
Effective search space used: 42361605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)