BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0009.p
         (889 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309512|ref|YP_003773604.1| TonB-dependent heme/hemoglobin ...  1197   0.0  
gi|300309449|ref|YP_003773541.1| TonB-dependent hemoglobin/trans...    67   5e-12

>gi|300309512|ref|YP_003773604.1| TonB-dependent heme/hemoglobin
           receptor protein [Herbaspirillum seropedicae SmR1]
          Length = 690

 Score = 1197 bits (3097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/687 (86%), Positives = 630/687 (91%), Gaps = 15/687 (2%)

Query: 1   MALQRQRIASAVFSALAAWSISAS-------------AQTADTTATPATAAQPALQPIVV 47
           MA+QRQ IA+AV SALA WS++AS                         AAQPALQPIVV
Sbjct: 1   MAIQRQLIATAVLSALATWSLAASAQTAAPAAPIDPAVSVTPAAPAAPAAAQPALQPIVV 60

Query: 48  TATPFASQEDVQVLTPAKVIAGDELRNKLGNSLGDTLSGELGVSASAFGAGASRPIIRGM 107
           TATPF SQEDVQVLTPAKVIAGDELRNKLGNSLG+TLS ELGVSASAFGAGASRPIIRGM
Sbjct: 61  TATPFGSQEDVQVLTPAKVIAGDELRNKLGNSLGETLSSELGVSASAFGAGASRPIIRGM 120

Query: 108 EGPRVMILQNGMGVSDVSTVSNDHAVATEAATARQIEILRGPAALLYGSGAIGGLVNVVN 167
           EGPRVMILQNGMGVSDVSTVSNDHAVATEAATARQIEILRGPAALLYGSGAIGGLVNVVN
Sbjct: 121 EGPRVMILQNGMGVSDVSTVSNDHAVATEAATARQIEILRGPAALLYGSGAIGGLVNVVN 180

Query: 168 DRIPTELVGKPTGTVEGRYGTVDGEKNTSFSLDTSAGQIGLHLDGNYRDTDNYKIPGNAR 227
           DRIPTELVGKPTGTVEGRYGTVDGEKNTSFSLDTSAGQIGLHLDGNYRDT +YKIPGNAR
Sbjct: 181 DRIPTELVGKPTGTVEGRYGTVDGEKNTSFSLDTSAGQIGLHLDGNYRDTSDYKIPGNAR 240

Query: 228 QGDSSSASGRLPNSFTHETSLGGGISYVTNWGYVGLSVATLDDHYGIPTDEKSFIDLHQN 287
           QGD S+ASGRLPNSFTHE+S+G G SYV+NWGYVG+S ATLDDHYGIPT E SFIDLHQN
Sbjct: 241 QGDGSTASGRLPNSFTHESSVGLGASYVSNWGYVGVSAATLDDHYGIPTSELSFIDLHQN 300

Query: 288 RYDLDTVVNHPFAGIEKFRFRMGYTDYTHIEKAEDGTPNTVFSNRALQTRWELTHAPLAG 347
           RYD+DTVVN PFAGIEK R R+GYTDYTHIEK  DGTP+TVFSNRA+QTRWELTHAPLAG
Sbjct: 301 RYDIDTVVNQPFAGIEKLRMRLGYTDYTHIEKQRDGTPDTVFSNRAVQTRWELTHAPLAG 360

Query: 348 WHGTFGVQTEQSNYSALTPDTGVSELTPPTRSTSFAGFLVEERQFGQVLASAGLRAESVS 407
           WHGTFGVQTEQSNYSAL+  TG +ELTPPTRSTSFAGFLVEERQFGQVLASAGLR ESVS
Sbjct: 361 WHGTFGVQTEQSNYSALSAATGAAELTPPTRSTSFAGFLVEERQFGQVLASAGLRGESVS 420

Query: 408 RRPDSGSGLPGRDFSLISWSTGGLWTFQPGYGLGLTYSFAQRAPTVEELYSNGPHESTST 467
           RRPD+G    GRDF+L+SWSTG LWTFQPGYGLGLTYS AQRAPTVEELYSNGPHESTST
Sbjct: 421 RRPDAGR--QGRDFNLLSWSTGALWTFQPGYGLGLTYSLAQRAPTVEELYSNGPHESTST 478

Query: 468 YDIGDNQLKKETSHNIELSLQKTEGLVRWKGNVFRNKVNNYIYGRTNGQVDDTGAADPNG 527
           +DIG +QLKKETSHNIELSLQKTEGLVRWKGN+FRNKVNNYIYGRTNGQVDD+GAADPNG
Sbjct: 479 FDIGSSQLKKETSHNIELSLQKTEGLVRWKGNLFRNKVNNYIYGRTNGQVDDSGAADPNG 538

Query: 528 EFTQRFWSQGDATIRGVEAEVTYNWNGEGVSGRVFADTSRGTLDNLGNLPLQPSTRYGIE 587
           EFTQRFWSQ DA IRG EAEV+YNWNGEG+SGR+FADTSRGTLDNLGN+PLQP+TRYG+E
Sbjct: 539 EFTQRFWSQADAAIRGAEAEVSYNWNGEGMSGRLFADTSRGTLDNLGNIPLQPATRYGVE 598

Query: 588 LGYKTGPWASGVKVLRAQKQDRLASFETYETPSYTQLDANLSYTQRLNGVKLTWFALARN 647
           LGYKTGPWASG+KVLRAQ+QDRLASFETY TPSYTQ+DANLSYTQ+LNGVKLTWFALARN
Sbjct: 599 LGYKTGPWASGMKVLRAQRQDRLASFETYATPSYTQVDANLSYTQKLNGVKLTWFALARN 658

Query: 648 LLNQDIRLSTSVLRETVPLGGRNFIVG 674
           LLNQDIRLSTSVLRETVP+GGRNFIVG
Sbjct: 659 LLNQDIRLSTSVLRETVPMGGRNFIVG 685


>gi|300309449|ref|YP_003773541.1| TonB-dependent
           hemoglobin/transferrin/lactoferrin receptor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 765

 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 89/200 (44%), Gaps = 30/200 (15%)

Query: 5   RQRIASAVFSALAAW-SISASAQTADTTATP----------ATAAQPALQPIVVTATPFA 53
           + R A+AVF AL  W  + A AQ     +            A A+   LQ +VVTA    
Sbjct: 8   KSRCAAAVFLALQQWLCVGAYAQADQPQSVQSSSSDPSVVLAQASGKKLQEVVVTANRSG 67

Query: 54  SQEDVQVLTPAKVIAGDELRNKLGNSLGDTLSGELGVSA--------------SAFGAGA 99
           S +         VI+ +E+       + D L  E GV                +  G G 
Sbjct: 68  SSDSDHAAATVSVISAEEIEQHNARDIKDALRYEPGVEVKRSVYRMSGITGPGATTGRGG 127

Query: 100 SRPI-IRGMEGPRVMILQNGMGVS---DVSTVSNDHAVATEAATARQIEILRGPAALLYG 155
           +  I IRG++G RV++L++G+ +       T S      T+    R+IE+LRGPA+ LYG
Sbjct: 128 NEGISIRGLDGNRVLMLEDGISMPRSFSYGTSSVGRGATTDTELYRRIEVLRGPASSLYG 187

Query: 156 SGAIGGLVNVVNDRIPTELV 175
           S  + G VN +  + P +L+
Sbjct: 188 SDGLTGAVNFIT-KDPADLL 206


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,835,305
Number of extensions: 128751
Number of successful extensions: 353
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 2
Length of query: 889
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 795
Effective length of database: 1,174,780
Effective search space: 933950100
Effective search space used: 933950100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 135 (56.6 bits)