BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0002.p
         (312 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309518|ref|YP_003773610.1| ornithine cyclodeaminase [Herba...   516   e-148

>gi|300309518|ref|YP_003773610.1| ornithine cyclodeaminase
           [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  516 bits (1330), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/312 (86%), Positives = 283/312 (90%)

Query: 1   MHILDSLQTAQAMPYSALVDALARAAQELASGAIRAPERQVVPIDANSVLLGMPAIAEDL 60
           MHILD  QTAQA+PY+ALVDALARA QELA G IRAPERQVVPIDA SVLLGMPAIA+DL
Sbjct: 1   MHILDPRQTAQALPYAALVDALARATQELADGRIRAPERQVVPIDAASVLLGMPAIADDL 60

Query: 61  SVTKLITVHGDNARHQLPAIQGEVIAFETDTGRRLALMDGPTVTARRTAAMSLLGIRTLL 120
           SVTKLITVH DNARHQLPAIQGEVIAFET TGRRLALMDGPTVTARRTAAMS+LGIRTLL
Sbjct: 61  SVTKLITVHADNARHQLPAIQGEVIAFETQTGRRLALMDGPTVTARRTAAMSMLGIRTLL 120

Query: 121 PRTPQSALLIGTGAQAAAHADALAEVFGVRQFWVAARDLARTQAFCQAISERHPQVVASP 180
           PR PQSALLIGTG Q+AAHADAL E FGVRQFW+ ARDLARTQAFC+A+SERHPQ VASP
Sbjct: 121 PRQPQSALLIGTGVQSAAHADALVEFFGVRQFWIVARDLARTQAFCRALSERHPQAVASP 180

Query: 181 LPAQMLQQELPRTDVVIALTTSRVAVIPEQIAADTLAIGVGAFKPDMVEFPASLLHARRI 240
           LPAQMLQQ+LP TDVVIALTTSR AVIPE IAADTLAIGVGAFKPDMVEFPASLLHARRI
Sbjct: 181 LPAQMLQQDLPHTDVVIALTTSRSAVIPEHIAADTLAIGVGAFKPDMVEFPASLLHARRI 240

Query: 241 VVDDLAGAHHEAGDLIQAKVDWAGVVGIGDVLAGKTAVNTLDSAGALPVFKTVGQAAWDL 300
           VVDDLAGAHHEAGDLIQA VDW+GVV I DV+AG+     L S  ALPVFKTVGQAAWDL
Sbjct: 241 VVDDLAGAHHEAGDLIQAGVDWSGVVAIADVVAGRAPAAALASGAALPVFKTVGQAAWDL 300

Query: 301 AAARVMRTTLGI 312
           AAARVMR TLG+
Sbjct: 301 AAARVMRATLGL 312


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 968,390
Number of extensions: 41676
Number of successful extensions: 190
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 3
Length of query: 312
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,217,395
Effective search space: 276348665
Effective search space used: 276348665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)