BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0182.p
         (487 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311520|ref|YP_003775612.1| inosine-5'-monophosphate dehydr...   592   e-170

>gi|300311520|ref|YP_003775612.1| inosine-5'-monophosphate
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 489

 Score =  592 bits (1525), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 311/489 (63%), Positives = 387/489 (79%), Gaps = 5/489 (1%)

Query: 1   MRIIGKALSFDDVLLVPRHSTILPREVSLRTRLTRTIELNIPLLSSAMDTVTEAKLAIAI 60
           MR++ KAL+FDDVLLVP  S ILP++ SL TRLTR I LNIPL+S+AMDTVTEA+LAIA+
Sbjct: 1   MRLLQKALTFDDVLLVPAFSDILPKDTSLTTRLTRNISLNIPLVSAAMDTVTEARLAIAM 60

Query: 61  AQEGGIGIIHKNLSISRQAEEVRKVKRYEAGVVKDQITLSLDTSIREVLAVSGLNGVSSF 120
           AQEGGIGIIHKNL+   QA EV KVKR+E+GVV+D IT+     IR+V+A+S  +G+S F
Sbjct: 61  AQEGGIGIIHKNLTPKEQAREVSKVKRFESGVVRDPITIPPTMKIRDVIALSKQHGISGF 120

Query: 121 PIIDPRGKVAGLITSRDIRFAAQLDASVSSVMTHIDKLITVK---VSTGLQEAKRLMHQH 177
           P+++ +  V G+IT+RD+RF  +LDA V + MT  +KL+ VK    S   +EAKRLM++H
Sbjct: 121 PVVEGKALV-GIITNRDLRFEEELDAEVRAKMTPREKLVYVKENGSSADPEEAKRLMNKH 179

Query: 178 RLERVLVLDDEGYLKGLISVKDILKSTENPTACRDGDGRLRVGAAVGVGADTDARVEALI 237
           RLERV+V++D   L+GLI+VKDI KSTE+P AC+D  G+LRVGAAVGVG D D R+E L+
Sbjct: 180 RLERVMVVNDAFELRGLITVKDIEKSTEHPFACKDVHGKLRVGAAVGVGPDNDERIELLV 239

Query: 238 EAGVDVIVVDTAHGHSASVIRMVQRIKERHLDAVSVIAGNIATAEGALALAKAGADGVKV 297
            AGVDVIVVDTAHGHSA V+  V+ +K ++   V VI GNIATA  A AL + GAD VKV
Sbjct: 240 AAGVDVIVVDTAHGHSAGVLNRVKWVKTKY-PHVEVIGGNIATAAAAKALVEHGADAVKV 298

Query: 298 GIGPGSICTTRVVTGVGVLQITAVSEVGRALAGTNIPIIADGGIRYSGDIAKALAAGADT 357
           GIGPGSICTTR+V GVGV QI+A++ V  AL GT +P+IADGGIR+SGD+AKALAAGA  
Sbjct: 299 GIGPGSICTTRIVAGVGVPQISAIANVAEALKGTGVPVIADGGIRFSGDVAKALAAGASA 358

Query: 358 VMIGGLLAGTDEAPGALELYQGRQYKSYRGMGSLGAMEAGSKDRYFQHDIDAHDKLVPEG 417
           VM+G + AGT+EAPG + LYQGR YKSYRGMGSLGAM  GS DRYFQ   +  DK VPEG
Sbjct: 359 VMMGSMFAGTEEAPGEVILYQGRSYKSYRGMGSLGAMADGSADRYFQDGDNTADKFVPEG 418

Query: 418 IEGRVPYKGPASAVIHQLMGGLRSAMGYTGSASLTELHDSAEFMEITAAGLKESHVHDVQ 477
           IEGRV YKG   A+++QL+GG+RS+MGY G AS+ +  + AEF+EITAAG++ESHVHDVQ
Sbjct: 419 IEGRVAYKGSVVAILYQLVGGVRSSMGYCGCASIDDFRERAEFVEITAAGMRESHVHDVQ 478

Query: 478 ITRESPNYR 486
           IT+E+PNYR
Sbjct: 479 ITKEAPNYR 487


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,262,058
Number of extensions: 49354
Number of successful extensions: 241
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 398
Effective length of database: 1,198,455
Effective search space: 476985090
Effective search space used: 476985090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)